The combination of the Ion AmpliSeq SARS-CoV-2 Insight Research Assay Plug-In Suite and the SARS_CoV_2_lineageID Plug-In comprise a powerful and user-friendly analysis solution that enables you to focus on the biological meaning of your data. Developed to immediately inform public health initiatives and support local, regional, and national surveillance efforts, the analysis tools are part of a rapid, automated, and accurate targeted NGS solution that includes the Ion AmpliSeq SARS-CoV-2 Insight Research Assay: automated library prep workflow and manual workflow complete coverage of the SARS-CoV-2 genome and variants, including all serotypes.

The complete informatics package for SARS-CoV-2 local, regional, and global surveillance efforts as well as for epidemiological insights includes:

• SARS_CoV_2_annotateSnpEff Plug-In—identify and annotate your variants of interest with public or private databases, and perform multi-sample comparisons​
• Generateconsensus Plug-In—align reads to reference, identify low-frequency variants, get consensus sequence​
• SARS_CoV_2_lineageID—Identify samples lineage through an integrated Pangolin plugin

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