Name: [Hs00411547_g1] [SNHG1]
Creator: Thermo Fisher Scientific
Keywords: [SNHG1] Assay, [small nucleolar RNA host gene 1] Assay

Assay Details

Gene Symbol: SNHG1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_003098.1		9 - 10	395		100

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	CB145643.1	-	7 - 8	301	Chr. 11 - 62852510 - 62855885 [-] on Build GRCh38	100
GenBankmRNA	CN386538.1	-	7 - 8	320	Chr. 11 - 62852434 - 62855208 [-] on Build GRCh38	100
GenBankmRNA	CU453800.1	-	5 - 6	227	Chr. 11 - 62852177 - 62854557 [-] on Build GRCh38	100
GenBankmRNA	BP430181.1	-	3 - 4	133	Chr. 11 - 62852406 - 62853850 [-] on Build GRCh38	100
GenBankmRNA	AA160645.1	-	6 - 7	214	Chr. 11 - 62852282 - 62854908 [-] on Build GRCh38	100
GenBankmRNA	BM746222.1	-	9 - 10	392	Chr. 11 - 62852614 - 62855885 [-] on Build GRCh38	100
GenBankmRNA	CU445983.1	-	5 - 6	227	Chr. 11 - 62852252 - 62854557 [-] on Build GRCh38	100
GenBankmRNA	BG576308.1	-	6 - 7	272	Chr. 11 - 62852144 - 62855465 [-] on Build GRCh38	100
GenBankmRNA	CN386542.1	-	8 - 9	375	Chr. 11 - 62852467 - 62855467 [-] on Build GRCh38	100
GenBankmRNA	BQ719301.1	-	8 - 9	358	Chr. 11 - 62852207 - 62855453 [-] on Build GRCh38	100
GenBankmRNA	BI253434.1	-	8 - 9	372	Chr. 11 - 62852193 - 62855467 [-] on Build GRCh38	100
GenBankmRNA	BX397597.2	-	2 - 3		Chr. 11 - 62852022 - 62855463 [+] on Build GRCh38	100
GenBankmRNA	BM710724.1	-	8 - 9	373	Chr. 11 - 62852533 - 62855467 [-] on Build GRCh38	100
GenBankmRNA	BG929288.1	-	4 - 5	233	Chr. 11 - 62852310 - 62854052 [-] on Build GRCh38	100
GenBankmRNA	BM762980.1	-	9 - 10	389	Chr. 11 - 62852491 - 62855882 [-] on Build GRCh38	100
GenBankmRNA	BM747357.1	-	9 - 10	390	Chr. 11 - 62852529 - 62855883 [-] on Build GRCh38	100
GenBankmRNA	BG495569.1	-	7 - 8	274	Chr. 11 - 62852292 - 62855162 [-] on Build GRCh38	102
GenBankmRNA	BQ690328.1	-	8 - 9	371	Chr. 11 - 62852211 - 62855466 [-] on Build GRCh38	100
GenBankmRNA	CN386550.1	-	8 - 9	343	Chr. 11 - 62852577 - 62855438 [-] on Build GRCh38	100
GenBankmRNA	DR423262.1	-	7 - 8	328	Chr. 11 - 62852424 - 62855216 [-] on Build GRCh38	100
GenBankmRNA	AW963561.1	-	8 - 9	373	Chr. 11 - 62852467 - 62855467 [-] on Build GRCh38	100
GenBankmRNA	BF918042.1	-	2 - 3		Chr. 11 - 62852546 - 62854919 [+] on Build GRCh38	100
GenBankmRNA	BM784849.1	-	6 - 7	257	Chr. 11 - 62852559 - 62854943 [-] on Build GRCh38	100
GenBankmRNA	BG614836.1	-	9 - 10	390	Chr. 11 - 62852245 - 62855883 [-] on Build GRCh38	101
GenBankmRNA	BI768134.1	-	8 - 9	365	Chr. 11 - 62852465 - 62855460 [-] on Build GRCh38	100
GenBankmRNA	DT218171.1	-	7 - 8	333	Chr. 11 - 62852434 - 62855467 [-] on Build GRCh38	100
GenBankmRNA	DA727570.1	-	9 - 10	392	Chr. 11 - 62852469 - 62855885 [-] on Build GRCh38	100
GenBankmRNA	BI255462.1	-	8 - 9	374	Chr. 11 - 62852217 - 62855467 [-] on Build GRCh38	100
GenBankmRNA	BM747384.1	-	9 - 10	390	Chr. 11 - 62852532 - 62855883 [-] on Build GRCh38	100
GenBankmRNA	CN386551.1	-	8 - 9	379	Chr. 11 - 62852460 - 62855474 [-] on Build GRCh38	100
GenBankmRNA	BU902024.1	-		171	Chr. - - [-] on Build	100
GenBankmRNA	AA464349.1	-	8 - 9	369	Chr. 11 - 62852571 - 62855460 [-] on Build GRCh38	100
GenBankmRNA	BI334001.1	-	8 - 9	362	Chr. 11 - 62852208 - 62855457 [-] on Build GRCh38	100
GenBankmRNA	AI697646.1	-	3 - 4	416	Chr. 11 - 62852608 - 62854136 [-] on Build GRCh38	100
GenBankmRNA	CN386555.1	-	8 - 9	375	Chr. 11 - 62852588 - 62855466 [-] on Build GRCh38	100
GenBankmRNA	BX337289.2	-	8 - 9	372	Chr. 11 - 62851994 - 62855467 [-] on Build GRCh38	100
GenBankmRNA	BX457656.2	-	7 - 8		Chr. 11 - 62852056 - 62855460 [-] on Build GRCh38	100
GenBankmRNA	CN337004.1	-	7 - 8	457	Chr. 11 - 62852607 - 62855345 [-] on Build GRCh38	100
GenBankmRNA	BM741778.1	-	9 - 10	392	Chr. 11 - 62852450 - 62855885 [-] on Build GRCh38	100
GenBankmRNA	BF699462.1	-	9 - 10	393	Chr. 11 - 62852368 - 62855886 [-] on Build GRCh38	101
GenBankmRNA	CN386559.1	-	8 - 9	381	Chr. 11 - 62852641 - 62855460 [-] on Build GRCh38	100
GenBankmRNA	BF337906.1	-	3 - 4	505	Chr. 11 - 62852419 - 62854230 [-] on Build GRCh38	100
GenBankmRNA	BM765988.1	-	9 - 10	392	Chr. 11 - 62852538 - 62855885 [-] on Build GRCh38	100
GenBankmRNA	BM754174.1	-	4 - 5	161	Chr. 11 - 62852331 - 62854064 [-] on Build GRCh38	100
GenBankmRNA	BG167802.1	-	7 - 8	450	Chr. 11 - 62852618 - 62855596 [-] on Build GRCh38	101
GenBankmRNA	CN386537.1	-	8 - 9	365	Chr. 11 - 62852346 - 62855460 [-] on Build GRCh38	100
GenBankmRNA	BI258011.1	-	8 - 9	519	Chr. 11 - 62852622 - 62855615 [-] on Build GRCh38	101
GenBankmRNA	BI772659.1	-	8 - 9	357	Chr. 11 - 62852204 - 62855451 [-] on Build GRCh38	102
GenBankmRNA	BM772121.1	-	9 - 10	392	Chr. 11 - 62852500 - 62855885 [-] on Build GRCh38	100
GenBankmRNA	CN386541.1	-	3 - 4	214	Chr. 11 - 62852165 - 62853928 [-] on Build GRCh38	100
GenBankmRNA	AW954429.1	-	8 - 9	360	Chr. 11 - 62852468 - 62855455 [-] on Build GRCh38	100
GenBankmRNA	BI828157.1	-	7 - 8	327	Chr. 11 - 62852258 - 62855914 [-] on Build GRCh38	100
GenBankmRNA	CN386545.1	-	8 - 9	371	Chr. 11 - 62852621 - 62855460 [-] on Build GRCh38	100
GenBankmRNA	BQ934825.1	-	8 - 9	375	Chr. 11 - 62852148 - 62855467 [-] on Build GRCh38	100
GenBankmRNA	CU454459.1	-	2 - 3		Chr. 11 - 62852210 - 62854064 [+] on Build GRCh38	100
GenBankmRNA	CX783853.1	-	8 - 9	642	Chr. 11 - 62852595 - 62855737 [-] on Build GRCh38	100
GenBankmRNA	BM772480.1	-	9 - 10	392	Chr. 11 - 62852439 - 62855885 [-] on Build GRCh38	100
GenBankmRNA	CN386554.1	-	8 - 9	384	Chr. 11 - 62852447 - 62855467 [-] on Build GRCh38	100
GenBankmRNA	HY097673.1	-	8 - 9	339	Chr. 11 - 62852562 - 62855882 [-] on Build GRCh38	100
GenBankmRNA	BM772875.1	-	9 - 10	392	Chr. 11 - 62852441 - 62855885 [-] on Build GRCh38	100
GenBankmRNA	CU442961.1	-	5 - 6	227	Chr. 11 - 62852155 - 62854557 [-] on Build GRCh38	100
GenBankmRNA	BM750058.1	-	5 - 6	185	Chr. 11 - 62852366 - 62854542 [-] on Build GRCh38	100
GenBankmRNA	BM770053.1	-	4 - 5	161	Chr. 11 - 62852238 - 62854064 [-] on Build GRCh38	100
GenBankmRNA	CN386558.1	-		141	Chr. - - [-] on Build	100
GenBankmRNA	BX415837.2	-	2 - 3		Chr. 11 - 62852020 - 62855224 [+] on Build GRCh38	100
GenBankmRNA	BX341806.2	-	2 - 3		Chr. 11 - 62852016 - 62855191 [+] on Build GRCh38	100
GenBankmRNA	CN337005.1	-	7 - 8	468	Chr. 11 - 62852593 - 62855353 [-] on Build GRCh38	100
GenBankmRNA	BG531729.1	-	7 - 8	295	Chr. 11 - 62852266 - 62855885 [-] on Build GRCh38	100
GenBankmRNA	BM751992.1	-	9 - 10	390	Chr. 11 - 62852613 - 62855883 [-] on Build GRCh38	100
GenBankmRNA	BX415838.2	-	6 - 7	264	Chr. 11 - 62852040 - 62855444 [-] on Build GRCh38	100
GenBankmRNA	BX363515.2	-	2 - 3	82	Chr. 11 - 62851988 - 62853592 [-] on Build GRCh38	100
GenBankmRNA	AL581383.3	-	2 - 3		Chr. 11 - 62852032 - 62855216 [+] on Build GRCh38	100
GenBankmRNA	AV728106.1	-	8 - 9	365	Chr. 11 - 62852319 - 62855460 [-] on Build GRCh38	100
GenBankmRNA	BG110221.1	-		130	Chr. - - [-] on Build	100
GenBankmRNA	BG527213.1	-	9 - 10	393	Chr. 11 - 62852292 - 62855885 [-] on Build GRCh38	100
GenBankmRNA	CN386566.1	-	7 - 8	282	Chr. 11 - 62852550 - 62855172 [-] on Build GRCh38	100
GenBankmRNA	HY076972.1	-	8 - 9	338	Chr. 11 - 62852563 - 62855882 [-] on Build GRCh38	100
GenBankmRNA	BM771760.1	-	8 - 9	385	Chr. 11 - 62852449 - 62855467 [-] on Build GRCh38	100
GenBankmRNA	AL559848.3	-	8 - 9	365	Chr. 11 - 62852053 - 62855460 [-] on Build GRCh38	100
GenBankmRNA	BM823449.1	-	8 - 9	363	Chr. 11 - 62852446 - 62855458 [-] on Build GRCh38	100
GenBankmRNA	BM848355.1	-	9 - 10	392	Chr. 11 - 62852550 - 62855885 [-] on Build GRCh38	100
GenBankmRNA	CN386536.1	-	8 - 9	375	Chr. 11 - 62852433 - 62855467 [-] on Build GRCh38	100
GenBankmRNA	BG623014.1	-	9 - 10		Chr. 11 - 62852274 - 62855885 [-] on Build GRCh38	103
GenBankmRNA	BM770809.1	-	9 - 10	392	Chr. 11 - 62852636 - 62855885 [-] on Build GRCh38	100
GenBankmRNA	BM740049.1	-	8 - 9	387	Chr. 11 - 62852514 - 62855467 [-] on Build GRCh38	100
GenBankmRNA	CU445372.1	-	2 - 3		Chr. 11 - 62852021 - 62853592 [+] on Build GRCh38	100
GenBankmRNA	CN386544.1	-	8 - 9	356	Chr. 11 - 62852426 - 62855451 [-] on Build GRCh38	100
GenBankmRNA	BM772174.1	-	9 - 10	392	Chr. 11 - 62852491 - 62855885 [-] on Build GRCh38	100
GenBankmRNA	AL582671.3	-	2 - 3		Chr. 11 - 62852023 - 62855224 [+] on Build GRCh38	100
GenBankmRNA	N52726.1	-	5 - 6	218	Chr. 11 - 62852647 - 62854552 [-] on Build GRCh38	100
GenBankmRNA	CN386548.1	-	2 - 3	81	Chr. 11 - 62852108 - 62853578 [-] on Build GRCh38	100
GenBankmRNA	BM804354.1	-	6 - 7	248	Chr. 11 - 62852047 - 62855441 [-] on Build GRCh38	100
GenBankmRNA	HY048030.1	-	9 - 10	454	Chr. 11 - 62852631 - 62855947 [-] on Build GRCh38	100
GenBankmRNA	BI260697.1	-	8 - 9	382	Chr. 11 - 62852486 - 62855464 [-] on Build GRCh38	100
GenBankmRNA	BM771178.1	-	9 - 10	390	Chr. 11 - 62852441 - 62855883 [-] on Build GRCh38	100
GenBankmRNA	AL565570.3	-	2 - 3		Chr. 11 - 62852008 - 62853930 [+] on Build GRCh38	100
GenBankmRNA	CU444389.1	-	5 - 6	227	Chr. 11 - 62852229 - 62854557 [-] on Build GRCh38	100
GenBankmRNA	BM753954.1	-	9 - 10	393	Chr. 11 - 62852631 - 62855885 [-] on Build GRCh38	100
GenBankmRNA	CU454623.1	-	2 - 3		Chr. 11 - 62852021 - 62853117 [+] on Build GRCh38	100
GenBankmRNA	BF917912.1	-	5 - 6	202	Chr. 11 - 62852472 - 62854556 [-] on Build GRCh38	100
GenBankmRNA	BX091505.1	-	8 - 9	365	Chr. 11 - 62852395 - 62855460 [-] on Build GRCh38	100
GenBankmRNA	CU456351.1	-	5 - 6	227	Chr. 11 - 62852224 - 62854557 [-] on Build GRCh38	100
GenBankmRNA	CF456049.1	-	8 - 9	398	Chr. 11 - 62852298 - 62855460 [-] on Build GRCh38	100
GenBankmRNA	AL514896.3	-	8 - 9	349	Chr. 11 - 62852158 - 62855444 [-] on Build GRCh38	100
GenBankmRNA	BI060167.1	-	2 - 3	92	Chr. 11 - 62852354 - 62853592 [-] on Build GRCh38	100
GenBankmRNA	BG681844.1	-	8 - 9	366	Chr. 11 - 62852264 - 62855451 [-] on Build GRCh38	100
GenBankmRNA	BU553089.1	-	7 - 8	581	Chr. 11 - 62852439 - 62855467 [-] on Build GRCh38	100
GenBankmRNA	BM789697.1	-	5 - 6	184	Chr. 11 - 62852240 - 62854542 [-] on Build GRCh38	100
GenBankmRNA	AL555120.3	-	8 - 9	371	Chr. 11 - 62852324 - 62855466 [-] on Build GRCh38	100
GenBankmRNA	CU444332.1	-	2 - 3		Chr. 11 - 62852021 - 62853579 [+] on Build GRCh38	100
GenBankmRNA	HY109978.1	-	9 - 10	389	Chr. 11 - 62852554 - 62855882 [-] on Build GRCh38	100
GenBankmRNA	BQ637146.1	-	8 - 9	375	Chr. 11 - 62852445 - 62855467 [-] on Build GRCh38	100
GenBankmRNA	BM770682.1	-	4 - 5	161	Chr. 11 - 62852462 - 62854064 [-] on Build GRCh38	100
GenBankmRNA	CN386568.1	-	8 - 9	382	Chr. 11 - 62852447 - 62855466 [-] on Build GRCh38	100
GenBankmRNA	BM845735.1	-	8 - 9	342	Chr. 11 - 62852642 - 62855880 [-] on Build GRCh38	100
GenBankmRNA	BE886647.1	-	2 - 3	186	Chr. 11 - 62852081 - 62853696 [-] on Build GRCh38	100
GenBankmRNA	BF803404.1	-	2 - 3		Chr. 11 - 62852251 - 62853117 [+] on Build GRCh38	100
GenBankmRNA	BM753151.1	-	9 - 10	393	Chr. 11 - 62852628 - 62855885 [-] on Build GRCh38	100
GenBankmRNA	BM765264.1	-	9 - 10	392	Chr. 11 - 62852483 - 62855885 [-] on Build GRCh38	100
GenBankmRNA	BY996166.1	-	8 - 9	383	Chr. 11 - 62852414 - 62855467 [-] on Build GRCh38	100
GenBankmRNA	BM743536.1	-	6 - 7	258	Chr. 11 - 62852509 - 62854943 [-] on Build GRCh38	100
GenBankmRNA	BU196426.1	-		387	Chr. - - [-] on Build	100
GenBankmRNA	BM739328.1	-	4 - 5	161	Chr. 11 - 62852452 - 62854064 [-] on Build GRCh38	100
GenBankmRNA	CN386539.1	-	8 - 9	366	Chr. 11 - 62852439 - 62855457 [-] on Build GRCh38	100
GenBankmRNA	BX341807.2	-	8 - 9	372	Chr. 11 - 62852048 - 62855467 [-] on Build GRCh38	100
GenBankmRNA	BM805243.1	-	6 - 7	235	Chr. 11 - 62851996 - 62855166 [-] on Build GRCh38	100
GenBankmRNA	CN386543.1	-	8 - 9	365	Chr. 11 - 62852444 - 62855460 [-] on Build GRCh38	100
GenBankmRNA	BF132715.1	-		372	Chr. - - [-] on Build	100
GenBankmRNA	BE744456.1	-			Chr. - - [-] on Build	96
GenBankmRNA	CB268843.1	-	7 - 8	277	Chr. 11 - 62852419 - 62855165 [-] on Build GRCh38	100
GenBankmRNA	CK826165.1	-	8 - 9	509	Chr. 11 - 62852643 - 62855599 [-] on Build GRCh38	100
GenBankmRNA	CU445308.1	-	5 - 6	227	Chr. 11 - 62852189 - 62854557 [-] on Build GRCh38	100
GenBankmRNA	CN386547.1	-	8 - 9	370	Chr. 11 - 62852444 - 62855460 [-] on Build GRCh38	100
GenBankmRNA	BI255546.1	-	8 - 9	377	Chr. 11 - 62852267 - 62855462 [-] on Build GRCh38	100
GenBankmRNA	BM824508.1	-	1 - 2	42	Chr. 11 - 62852285 - 62853116 [-] on Build GRCh38	100
GenBankmRNA	BQ477769.1	-	8 - 9	509	Chr. 11 - 62852646 - 62855599 [-] on Build GRCh38	100
GenBankmRNA	CN386552.1	-	8 - 9	365	Chr. 11 - 62852374 - 62855460 [-] on Build GRCh38	100
GenBankmRNA	BU168780.1	-	8 - 9	387	Chr. 11 - 62852268 - 62855483 [-] on Build GRCh38	100
GenBankmRNA	BM766186.1	-	9 - 10	392	Chr. 11 - 62852453 - 62855885 [-] on Build GRCh38	100
GenBankmRNA	W21481.1	-		165	Chr. - - [-] on Build	100
GenBankmRNA	CN386556.1	-	7 - 8	549	Chr. 11 - 62852481 - 62855460 [-] on Build GRCh38	100
GenBankmRNA	CU451952.1	-	5 - 6	227	Chr. 11 - 62852204 - 62854559 [-] on Build GRCh38	100
GenBankmRNA	L36587.3	-	8 - 9	635	Chr. 11 - 62851989 - 62855730 [-] on Build GRCh38	100
GenBankmRNA	DA380033.1	-	9 - 10	389	Chr. 11 - 62852545 - 62855882 [-] on Build GRCh38	100
GenBankmRNA	BG179164.1	-	3 - 4	123	Chr. 11 - 62852130 - 62853835 [-] on Build GRCh38	100
GenBankmRNA	AA401593.1	-	8 - 9	350	Chr. 11 - 62852604 - 62855445 [-] on Build GRCh38	100
GenBankmRNA	BI768992.1	-	8 - 9	366	Chr. 11 - 62852281 - 62855460 [-] on Build GRCh38	100
GenBankmRNA	CR992196.1	-	8 - 9	379	Chr. 11 - 62852199 - 62855467 [-] on Build GRCh38	100
GenBankmRNA	CN386564.1	-	7 - 8	561	Chr. 11 - 62852567 - 62855460 [-] on Build GRCh38	100
GenBankmRNA	BM765544.1	-	9 - 10	392	Chr. 11 - 62852615 - 62855885 [-] on Build GRCh38	100

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	WD repeat domain 74	WDR74		-11.0kb	Sense	Chr. 11 - 62832905 - 62841809 on NCBI Build GRCh38
Downstream	small nucleolar RNA, C/D box 31	SNORD31	RNU31, SNORD31A, U31	211.0	Sense	Chr. 11 - 62853326 - 62853393 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as HTA transcript cluster(s) TC11001884.hg.1

Set Membership:

Amplicon length between 86 and 100

Amplicon length greater than or equal to 101

Detect Genomic DNA

Homo sapiens

Probe spans exons

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR11022133.hg.1	ENST00000535076.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR11022133.hg.1	ENST00000537869.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR11022133.hg.1	ENST00000537925.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR11022133.hg.1	ENST00000538654.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR11022133.hg.1	ENST00000539921.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR11022133.hg.1	ENST00000539975.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR11022133.hg.1	ENST00000540725.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR11022133.hg.1	ENST00000541578.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR11022133.hg.1	ENST00000541615.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR11022133.hg.1	ENST00000542112.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR11022133.hg.1	ENST00000545440.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR11022133.hg.1	ENST00000545688.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR11022133.hg.1	NR_003098.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR11022133.hg.1	TC11001884.hg.1	HTA TC

Availability	Made To Order
Catalog #	4426961
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System Message

Genomic Map