Assay Details

Gene Symbol: LINC01558
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_026773.1		1 - 2	249		81
GenBank mRNA	AB016901.1	-	1 - 2	261		81
GenBank mRNA	BC027853.1	-	1 - 2	272		81

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BI771211.1	-	1 - 2	271		Chr. 6 - 167785386 - 167796859 [-] on Build GRCh38	81

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	uncharacterized LOC441179	LOC441179			Anti-sense	Chr. 6 - 167795023 - 167798248 on NCBI Build GRCh38
Downstream	AFDN antisense RNA 1 (head to head)	AFDN-AS1	C6orf124, HGC6.4, MLLT4-AS1, dJ431P23.3	27.0kb	Sense	Chr. 6 - 167823890 - 167826796 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0600013942.hg.1
This assay targets the same location as HTA transcript cluster(s) TC06002318.hg.1

Additional Information:

This assay is in the 5'UTR region of the AB016901.1 transcripts.

Set Membership:

Amplicon length between 71 and 85

Mammalian Gene Collection

Homo sapiens

1700

Probe spans exons

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Affymetrix ABI

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR06029098.hg.1	ENST00000366822.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06029098.hg.1	NR_026773.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06029098.hg.1	TC06002318.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR06029097.hg.1	ENST00000366822.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06029097.hg.1	NR_026773.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06029097.hg.1	TC06002318.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC0600013942.hg.1	ENST00000366822.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600013942.hg.1	ENST00000366822.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600013942.hg.1	ENST00000366822.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600013942.hg.1	ENST00000366822.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600013942.hg.1	ENST00000495520.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600013942.hg.1	ENST00000495520.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600013942.hg.1	ENST00000495520.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600013942.hg.1	ENST00000495520.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600013942.hg.1	NR_026773.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600013942.hg.1	NR_026773.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600013942.hg.1	NR_026773.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0600013942.hg.1	NR_026773.1	Refseq
Affymetrix Human Clariom D Assay	TC0600013942.hg.1	ENST00000366822.2	Ensembl
Affymetrix Human Clariom D Assay	TC0600013942.hg.1	ENST00000366822.2	Ensembl
Affymetrix Human Clariom D Assay	TC0600013942.hg.1	ENST00000366822.2	Ensembl
Affymetrix Human Clariom D Assay	TC0600013942.hg.1	ENST00000366822.2	Ensembl
Affymetrix Human Clariom D Assay	TC0600013942.hg.1	ENST00000495520.5	Ensembl
Affymetrix Human Clariom D Assay	TC0600013942.hg.1	ENST00000495520.5	Ensembl
Affymetrix Human Clariom D Assay	TC0600013942.hg.1	ENST00000495520.5	Ensembl
Affymetrix Human Clariom D Assay	TC0600013942.hg.1	ENST00000495520.5	Ensembl
Affymetrix Human Clariom D Assay	TC0600013942.hg.1	NR_026773.1	Refseq
Affymetrix Human Clariom D Assay	TC0600013942.hg.1	NR_026773.1	Refseq
Affymetrix Human Clariom D Assay	TC0600013942.hg.1	NR_026773.1	Refseq
Affymetrix Human Clariom D Assay	TC0600013942.hg.1	NR_026773.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600196074.hg.1	ENST00000366822.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0600196074.hg.1	ENST00000495520.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600196074.hg.1	NR_026773.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600196074.hg.1	TC0600013942.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0600196074.hg.1	NR_026773.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600196074.hg.1	ENST00000366822.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0600196074.hg.1	ENST00000495520.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600196072.hg.1	ENST00000366822.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0600196072.hg.1	ENST00000495520.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600196072.hg.1	NR_026773.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600196072.hg.1	TC0600013942.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0600196072.hg.1	ENST00000366822.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0600196072.hg.1	ENST00000495520.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600196072.hg.1	NR_026773.1	Refseq

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Catalog #	4426961
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System Message

Genomic Map