Hamburger Menu Button
Thermo Fisher Scientific Logo
Sign in
Don't have an account ? Create Account
  • Products
    • Antibodies
    • Cell Culture Media
    • Chemicals
    • Chromatography Columns and Cartridges
    • Lab Equipment
    • Lab Plasticware and Supplies
    • Microplates
    • Oligos, Primers, Probes and Genes
    • TaqMan Real-Time PCR Assays
    • Greener Products
    • See all product categories
  • Applications
    • Bioprocessing
    • Cell Culture and Transfection
    • Cell and Gene Therapy
    • Chromatography
    • Molecular Testing
    • Digital Solutions
    • DNA and RNA Extraction and Analysis
    • Spectroscopy, Elemental and Isotope Analysis
    • See all applications and techniques
  • Services
    • 360° CDMO and CRO Solutions
    • CDMO Services
    • CRO Services
    • Custom Services
    • Enterprise Services
    • Financial and Leasing Services
    • Instrument Services
    • Lab Informatics
    • OEM and Commercial Supply
    • Training Services
    • Unity Lab Services
    • See all services
  • Help and Support
    • How to Order
    • Instrument Support
    • Learning Centers
    • Register for an Account
    • Technical Support Centers
    • See all help and support topics
  • Popular
    • TaqMan Real-Time PCR Assays
      TaqMan Real-Time PCR Assays
    • Antibodies
      Antibodies
    • Oligos, Primers & Probes
      Oligos, Primers & Probes
    • GeneArt Gene Synthesis
      GeneArt Gene Synthesis
    • Cell Culture Plastics
      Cell Culture Plastics
  • Contact Us
  • Quick Order
  • Order Status and Tracking
  • Documents and Certificates
Thermo Fisher Scientific Logo

Search Thermo Fisher Scientific

Search All
Search button Close
          • Order Status
          • Quick Order
          • Sign in
            Sign in
            Don't have an account ? Create Account
            • Account
            • Check Order Status
            • Aspire Member Program
            • Connect: Lab, Data, Apps
            • Custom Products & Projects
            • Services Central
          This product has been added to your favorites list. Go to My Favorites

          System Message

          OKCancel
          LOADING ...
          • Home
          • › Search Tool
          • › Search Results
          • › Hs01029240_m1
          See other CLN3 GE Assays ›
          Gene Symbol:
          CLN3
          Gene Name:
          CLN3, battenin
          Gene Aliases:
          BTS, JNCL
          Chromosome Location:
          Chr.16: 28466653 - 28492302 on Build GRCh38
          Species:
          Human
          Species Specific ID (Flybase ID):
          -
          Assay ID Hs01029240_m1
          Size
          Availability Made To Order
          Catalog # 4351372
          Price
          Your Price
          Online offer:
          Check your price ›
          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

          LOADING...
          ×
          Back To Top

          Assay Details

          Gene Symbol: CLN3
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_000086.2 NP_000077.1 9 - 10 1115 105
          NM_001042432.1 NP_001035897.1 10 - 11 1151 105
          NM_001286104.1 NP_001273033.1 9 - 10 1079 105
          NM_001286105.1 NP_001273034.1 7 - 8 956 105
          NM_001286109.1 NP_001273038.1 7 - 8 964 105
          NM_001286110.1 NP_001273039.1 8 - 9 1036 105
          GenBank mRNA AF015593.1 - 9 - 10 846 105
          AF015594.1 - 8 - 9 807 105
          AF015595.1 - 7 - 8 666 105
          AF015597.1 - 7 - 8 648 105
          AF015598.1 - 7 - 8 600 105
          AF015599.1 - 5 - 6 491 105
          AF015600.1 - 5 - 6 522 105
          AF015601.1 - 4 - 5 436 105
          AF015602.1 - 4 - 5 386 105
          AF077956.1 - 9 - 10 792 105
          AF077957.1 - 9 - 10 792 105
          AF077958.1 - 9 - 10 792 105
          AF077959.1 - 9 - 10 792 105
          AF077960.1 - 8 - 9 648 105
          AF077961.1 - 9 - 10 792 105
          AF077962.1 - 9 - 10 792 105
          AF077963.1 - 9 - 10 792 105
          AF077964.1 - 7 - 8 575 105
          AF077966.1 - 9 - 10 792 105
          AF077967.1 - 8 - 9 712 105
          AF077968.1 - 7 - 8 575 105
          AF077969.1 - 5 - 6 406 105
          AF077970.1 - 5 - 6 406 105
          AF077971.1 - 9 - 10 792 105
          AF077973.1 - 7 - 8 633 105
          AF078169.1 - 9 - 10 792 105
          AK294070.1 - 8 - 9 960 105
          AK297690.1 - 7 - 8 898 105
          AK302027.1 - 9 - 10 819 105
          AK302138.1 - 9 - 10 840 105
          AK313002.1 - 10 - 11 923 105
          BC002394.2 - 10 - 11 909 2820893 105
          BC004433.1 - 10 - 11 909 2820893 105
          BC111068.1 - 7 - 8 894 5764535 105
          EF587245.1 - 3 - 4 292 105
          U32680.1 - 9 - 10 929 105

          Back To Top

          More Information


          Updated Mapping Information

          This assay targets the same location as Clariom D transcript cluster(s) TC1600009861.hg.1
          This assay targets the same location as HTA transcript cluster(s) TC16002064.hg.1

          Set Membership:

          Ambion siRNA available Amplicon length greater than or equal to 101 Mammalian Gene Collection Homo sapiens Probe spans exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene CLN3

          Gene Ontology Categories:

          Function(s) Process(es)

          action potential
          globoside metabolic process
          cellular amino acid metabolic process
          ceramide metabolic process
          glucosylceramide metabolic process
          galactosylceramide metabolic process
          sphingomyelin metabolic process
          receptor-mediated endocytosis
          vacuolar transport
          lysosome organization
          lysosomal lumen acidification
          associative learning
          arginine transport
          macroautophagy
          negative regulation of macroautophagy
          protein processing
          protein catabolic process
          ionotropic glutamate receptor signaling pathway
          lysosomal lumen pH elevation
          neurotransmitter metabolic process
          amyloid precursor protein catabolic process
          negative regulation of apoptotic process
          negative regulation of catalytic activity
          negative regulation of neuron apoptotic process
          negative regulation of proteolysis
          vesicle transport along microtubule
          neuromuscular process controlling balance
          regulation of cytosolic calcium ion concentration
          membrane organization
          autophagosome maturation
          protein binding
          unfolded protein binding

          MicroArray Probes:

          Affymetrix

          Array Name Probe IDs Targets Target Type
          Affymetrix Human Transcriptome Array 2.0 PSR16014213.hg.1 ENST00000333496.8 Ensembl
          Affymetrix Human Transcriptome Array 2.0 PSR16014213.hg.1 ENST00000354630.5 Ensembl
          Affymetrix Human Transcriptome Array 2.0 PSR16014213.hg.1 ENST00000355477.5 Ensembl
          Affymetrix Human Transcriptome Array 2.0 PSR16014213.hg.1 ENST00000357076.5 Ensembl
          Affymetrix Human Transcriptome Array 2.0 PSR16014213.hg.1 ENST00000357806.6 Ensembl
          Affymetrix Human Transcriptome Array 2.0 PSR16014213.hg.1 ENST00000357857.8 Ensembl
          Affymetrix Human Transcriptome Array 2.0 PSR16014213.hg.1 ENST00000359984.6 Ensembl
          Affymetrix Human Transcriptome Array 2.0 PSR16014213.hg.1 ENST00000360019.2 Ensembl
          Affymetrix Human Transcriptome Array 2.0 PSR16014213.hg.1 ENST00000395653.4 Ensembl
          Affymetrix Human Transcriptome Array 2.0 PSR16014213.hg.1 ENST00000535392.1 Ensembl
          Affymetrix Human Transcriptome Array 2.0 PSR16014213.hg.1 NM_000086.2 Refseq
          Affymetrix Human Transcriptome Array 2.0 PSR16014213.hg.1 NM_001042432.1 Refseq
          Affymetrix Human Transcriptome Array 2.0 PSR16014213.hg.1 TC16002064.hg.1 HTA TC
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000333496.13 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000355477.9 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000357806.11 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000357857.13 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000359984.11 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000360019.6 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000395653.8 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000561689.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000563874.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000564574.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000565047.1 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000565140.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000565316.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000565354.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000565778.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000566057.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000566083.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000566824.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000567495.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000567963.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000568076.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000568224.4 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000568422.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000568452.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000568472.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000568497.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000568558.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000569030.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000569430.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000623866.1 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000628023.2 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000631023.2 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 NM_000086.2 Refseq
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 NM_001042432.1 Refseq
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 NM_001286104.1 Refseq
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 NM_001286105.1 Refseq
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 NM_001286109.1 Refseq
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 NM_001286110.1 Refseq
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000359984.11 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 TC1600009861.hg.1 Clariom D TC
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000333496.13 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000355477.9 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000357806.11 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000357857.13 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000360019.6 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000395653.8 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000561689.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000563874.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000564574.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000565047.1 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000565778.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000565140.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000565316.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000565354.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000566057.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000566083.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000566824.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000567495.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000567963.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000568076.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000568224.4 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000568422.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000568452.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000568472.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000568497.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000568558.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000569030.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000569430.5 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000623866.1 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000628023.2 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 ENST00000631023.2 Ensembl
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 NM_000086.2 Refseq
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 NM_001042432.1 Refseq
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 NM_001286104.1 Refseq
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 NM_001286105.1 Refseq
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 NM_001286109.1 Refseq
          Affymetrix Human Clariom D Assay PSR1600175859.hg.1 NM_001286110.1 Refseq

          Back To Top

          Related Products

          • TaqMan® Fast Advanced Master Mix
          • SuperScript® VILO™ cDNA Synthesis Kit
          Ordering Plus Icon Minus Icon
          • Order Status
          • Order Help
          • Quick Order
          • Supply Center
          • eProcurement
          Support Plus Icon Minus Icon
          • Help and Support
          • Contact Us
          • Technical Support Centers
          • Documents and Certificates
          • Report a Site Issue
          Resources Plus Icon Minus Icon
          • Learning Centers
          • Promotions
          • Events and Webinars
          • Social Media
          About Thermo Fisher Plus Icon Minus Icon
          • About Us
          • Careers
          • Investors
          • News
          • Social Responsibility
          • Trademarks
          • Consumer Health Data Privacy Policy
          Our Portfolio Plus Icon Minus Icon
          • Thermo Scientific
          • Applied Biosystems
          • Invitrogen
          • Gibco
          • Ion Torrent
          • Fisher Scientific
          • Unity Lab Services
          • Patheon
          • PPD
          • Terms & Conditions
          • Privacy Information Center
          • Price & Freight Policy
          © 2006-2025 Thermo Fisher Scientific Inc. All rights reserved. All trademarks are the property of Thermo Fisher Scientific and its subsidiaries unless otherwise specified.
          United States flag icon
          United States

          Your items have has been added!


          Host server : magellan-search-6659c69d8f-875ns:80/100.66.130.62:80.
          git-commit: 1827ea18100b76eacea45a9906e00cdefce2d263
          git-url: https://github.com/thermofisher/magellan-search
          git-branch: release/2.30.1-2025.05.22-1.0