Name: [Hs01388412_m1] [LINC01545]
Creator: Thermo Fisher Scientific
Keywords: [LINC01545] Assay, [long intergenic non-protein coding RNA 1545] Assay

Assay Details

Gene Symbol: LINC01545
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_046101.1		2 - 3	154		69
GenBank mRNA	BC038573.2	-	2 - 3	154		69

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BG254667.1	-	2 - 3	164		Chr. X - 46887387 - 46899704 [-] on Build GRCh38	69

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	retinitis pigmentosa 2 (X-linked recessive)	RP2	DELXp11.3, NM23-H10, NME10, TBCCD2, XRP2	-7.9kb	Anti-sense	Chr. X - 46836912 - 46882358 on NCBI Build GRCh38
Downstream	jade family PHD finger 3	JADE3	JADE-3, PHF16	17.7kb	Anti-sense	Chr. X - 46912276 - 47061242 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0X00009545.hg.1
This assay targets the same location as HTA transcript cluster(s) TC0X000993.hg.1

Set Membership:

Amplicon length less than or equal to 70

Mammalian Gene Collection

Homo sapiens

Probe spans exons

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR0X013182.hg.1	ENST00000377879.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X013182.hg.1	NR_046101.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR0X013182.hg.1	TC0X000993.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC0X00009545.hg.1	ENST00000377879.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009545.hg.1	ENST00000377879.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009545.hg.1	ENST00000377879.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009545.hg.1	ENST00000377879.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009545.hg.1	ENST00000618037.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009545.hg.1	ENST00000618037.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009545.hg.1	ENST00000618037.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009545.hg.1	NR_046101.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009545.hg.1	NR_046101.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009545.hg.1	NR_046101.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009545.hg.1	NR_046101.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR0X013184.hg.1	ENST00000377879.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X013184.hg.1	NR_046101.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR0X013184.hg.1	TC0X000993.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR0X013183.hg.1	ENST00000377879.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X013183.hg.1	NR_046101.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR0X013183.hg.1	TC0X000993.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR0X00165136.hg.1	ENST00000377879.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00165136.hg.1	ENST00000618037.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00165136.hg.1	NR_046101.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00165136.hg.1	TC0X00009545.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0X00165136.hg.1	NR_046101.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00165136.hg.1	ENST00000377879.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00165136.hg.1	ENST00000618037.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009545.hg.1	ENST00000377879.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009545.hg.1	ENST00000377879.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009545.hg.1	ENST00000377879.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009545.hg.1	ENST00000377879.7	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009545.hg.1	ENST00000618037.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009545.hg.1	ENST00000618037.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009545.hg.1	ENST00000618037.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009545.hg.1	NR_046101.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00009545.hg.1	NR_046101.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00009545.hg.1	NR_046101.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00009545.hg.1	NR_046101.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00165139.hg.1	ENST00000377879.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00165139.hg.1	NR_046101.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00165139.hg.1	TC0X00009545.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0X00165139.hg.1	ENST00000377879.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00165139.hg.1	NR_046101.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00165137.hg.1	ENST00000377879.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00165137.hg.1	ENST00000618037.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00165137.hg.1	NR_046101.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00165137.hg.1	TC0X00009545.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0X00165137.hg.1	ENST00000377879.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00165137.hg.1	ENST00000618037.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00165137.hg.1	NR_046101.1	Refseq

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Catalog #	4426961
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Genomic Map