Name: [Hs01598099_g1] [LINC01547]
Creator: Thermo Fisher Scientific
Keywords: [LINC01547] Assay, [long intergenic non-protein coding RNA 1547] Assay

Assay Details

Gene Symbol: LINC01547
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_027128.1		2 - 3	588		112
RefSeq	NR_027129.1		3 - 4	732		112
GenBank mRNA	AF380178.1	-	3 - 4	664		112
	AY040088.1	-	4 - 5	614		112
	BC128244.1	-	2 - 3	446		112
	BC128245.1	-	2 - 3	446		112
	BI829356.1	-	2 - 3	552		112
	BI907880.1	-	2 - 3	588		112

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	BF115109.1	-	1 - 2		Chr. 21 - 44934733 - 44935793 [+] on Build GRCh38	112
GenBankmRNA	DB306514.1	-	1 - 2		Chr. 21 - 44934733 - 44935778 [+] on Build GRCh38	112
GenBankmRNA	FY213269.1	-			Chr. - - [-] on Build	112
GenBankmRNA	FY213399.1	-	2 - 3	548	Chr. 21 - 44934387 - 44939873 [-] on Build GRCh38	112
GenBankmRNA	FY213271.1	-			Chr. - - [-] on Build	112
GenBankmRNA	AA521500.1	-			Chr. - - [-] on Build	111
GenBankmRNA	FY210788.1	-	2 - 3	371	Chr. 21 - 44934315 - 44939873 [-] on Build GRCh38	112
GenBankmRNA	HY240580.1	-	1 - 2		Chr. 21 - 44934733 - 44935739 [+] on Build GRCh38	112
GenBankmRNA	FY212783.1	-		547	Chr. - - [-] on Build	112
GenBankmRNA	FY211216.1	-		548	Chr. - - [-] on Build	112
GenBankmRNA	FY210802.1	-	2 - 3		Chr. 21 - 44934315 - 44939867 [+] on Build GRCh38	112
GenBankmRNA	FY213940.1	-		371	Chr. - - [-] on Build	112
GenBankmRNA	FY211596.1	-		548	Chr. - - [-] on Build	112
GenBankmRNA	FY212609.1	-	2 - 3		Chr. 21 - 44934315 - 44939873 [+] on Build GRCh38	112
GenBankmRNA	FY211768.1	-	2 - 3	371	Chr. 21 - 44934317 - 44939873 [-] on Build GRCh38	112

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	ITGB2 antisense RNA 1	ITGB2-AS1		-5.1kb	Anti-sense	Chr. 21 - 44921035 - 44929680 on NCBI Build GRCh38
Downstream	family with sequence similarity 207 member A	FAM207A	C21orf70, PRED56	4.1kb	Anti-sense	Chr. 21 - 44939697 - 44976989 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC2100008395.hg.1
This assay targets the same location as HTA transcript cluster(s) TC21000539.hg.1

Set Membership:

Amplicon length greater than or equal to 101

3' Most

Mammalian Gene Collection

Detect Genomic DNA

Homo sapiens

Probe spans exons

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000330551.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000330551.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000330551.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000330551.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000330551.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000330551.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000615847.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000615847.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000615847.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000615847.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	ENST00000615847.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	NR_027128.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	NR_027128.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	NR_027128.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	NR_027128.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	NR_027128.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	NR_027128.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	NR_027128.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	NR_027128.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	NR_027129.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	NR_027129.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	NR_027129.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	NR_027129.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	NR_027129.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	NR_027129.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100008395.hg.1	NR_027129.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR21006504.hg.1	TC21000539.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR21006504.hg.1	ENST00000330551.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR21006504.hg.1	NR_027129.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR21006505.hg.1	TC21000539.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR21006505.hg.1	ENST00000330551.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR21006505.hg.1	ENST00000397841.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR21006505.hg.1	NR_027128.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR21006505.hg.1	NR_027129.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100156976.hg.1	ENST00000330551.3	Ensembl
Affymetrix Human Clariom D Assay	PSR2100156976.hg.1	NR_027129.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100156976.hg.1	TC2100008395.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2100156976.hg.1	ENST00000330551.3	Ensembl
Affymetrix Human Clariom D Assay	PSR2100156976.hg.1	NR_027129.1	Refseq
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000330551.3	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000330551.3	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000330551.3	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000330551.3	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000330551.3	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000330551.3	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000615847.2	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000615847.2	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000615847.2	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000615847.2	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	ENST00000615847.2	Ensembl
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	NR_027128.1	Refseq
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	NR_027128.1	Refseq
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	NR_027128.1	Refseq
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	NR_027128.1	Refseq
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	NR_027128.1	Refseq
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	NR_027128.1	Refseq
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	NR_027128.1	Refseq
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	NR_027128.1	Refseq
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	NR_027129.1	Refseq
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	NR_027129.1	Refseq
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	NR_027129.1	Refseq
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	NR_027129.1	Refseq
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	NR_027129.1	Refseq
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	NR_027129.1	Refseq
Affymetrix Human Clariom D Assay	TC2100008395.hg.1	NR_027129.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100156978.hg.1	ENST00000330551.3	Ensembl
Affymetrix Human Clariom D Assay	PSR2100156978.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Clariom D Assay	PSR2100156978.hg.1	NR_027128.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100156978.hg.1	NR_027129.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100156978.hg.1	TC2100008395.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2100156978.hg.1	ENST00000330551.3	Ensembl
Affymetrix Human Clariom D Assay	PSR2100156978.hg.1	ENST00000397841.5	Ensembl
Affymetrix Human Clariom D Assay	PSR2100156978.hg.1	NR_027128.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100156978.hg.1	NR_027129.1	Refseq

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Catalog #	4426961
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System Message

Genomic Map