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- Gene Symbol:
-
SCARNA17 - Gene Name:
- small Cajal body-specific RNA 17
- Gene Aliases:
- U91
- Chromosome Location:
- Chr.18: 49814023 - 49814443 on Build GRCh38
- Species:
- Human
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: SCARNA17 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NR_003003.2 | 1 | 353 | 84 | ||
Adjacent Gene Details
| Gene name | Gene Symbol | Alias | Distance | Relative Direction | Location Chromsome | |
|---|---|---|---|---|---|---|
| Upstream | small nucleolar RNA host gene 22 | SNHG22 |
SCARNA17, SCARNA17HG |
Sense | Chr. 18 - 49814023 - 49851059 on NCBI Build GRCh38 | |
| Downstream | myosin VB | MYO5B | 8.3kb | Anti-sense | Chr. 18 - 49822786 - 50195081 on NCBI Build GRCh38 |
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as Clariom D transcript cluster(s) TC1800007304.hg.1This assay targets the same location as HTA transcript cluster(s) TC18000176.hg.1
Set Membership: |
Amplicon length between 71 and 85
3' Most
Detect Genomic DNA
Homo sapiens
Both primers and probe map within a single exon
|
MicroArray Probes:
Agilent
Affymetrix
ArrayStar
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Human Genome Microarray 4x44K v2 | A_32_P37592 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_44k_32_P37592 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4021 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4022 | - | - |
| Agilent Whole Human Genome Oligo Microarray 4x44K | 18770 | - | - |
| Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray | 43653 | - | - |
| Agilent Whole Human Genome Microarray 4x44K v2 | A_32_P37592 | - | - |
| SurePrint G3 Human GE Microarray G4851A | A_32_P37592 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P10698335 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299497 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299492 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299500 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P10698346 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P10698339 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299488 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299489 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P10698344 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299496 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299498 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299494 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P17067468 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299502 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P10698338 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P10698336 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299499 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P10698340 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P31299499 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P31299489 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P31299500 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P31299488 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10698338 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10698336 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10698335 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10698346 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P31299498 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P17067468 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10698344 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10698340 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299500 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P10698346 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P17067468 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299499 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299494 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P10698344 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P10698336 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P10698338 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299497 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299496 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299502 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P10698335 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299498 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299492 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P10698340 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299489 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P10698339 | - | - |
| Agilent Whole Chr array_18 19 21 | A_17_P31299488 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P31299489 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10698346 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P31299488 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P31299499 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10698336 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10698340 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10698344 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P17067468 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P31299498 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10698335 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P10698338 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P31299500 | - | - |
| Whole Human Genome Oligo Microarray G4112A | A_32_P37592 | - | - |
| Agilent Whole Human Genome Microarray 4x44K G4112F | A_32_P37592 | - | - |
| Agilent Human 1B Microarray G4111A | A_32_P37601 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10698344 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10698345 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10698340 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10698341 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10698335 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P17067476 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P17067469 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10698338 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P10698337 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P17067471 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Human Gene 1.0 ST Array | NR_003003_at | - | - |
| Affymetrix Human Gene 1.0 ST Array | 8021182 | - | - |
| Affymetrix Human Gene 1.0 ST Array | 8021184 | - | - |
| Affymetrix Human Gene 1.1 ST Array | 8021183 | - | - |
| Affymetrix Human Gene 1.1 ST Array | 8021181 | - | - |
| Affymetrix HT HG-U133+ PM Array Plate | 240830_PM_at | - | - |
| Affymetrix Human Transcriptome Array 2.0 | PSR18002055.hg.1 | ENST00000516330.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR18002055.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR18002055.hg.1 | TC18000176.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR18002054.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR18002054.hg.1 | TC18000176.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR18002053.hg.1 | ENST00000516183.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR18002053.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR18002053.hg.1 | TC18000176.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | PSR18002052.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR18002052.hg.1 | TC18000176.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | ENST00000516183.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | ENST00000516330.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | ENST00000589499.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | ENST00000589499.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | ENST00000589499.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | ENST00000589499.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | ENST00000589499.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | ENST00000615535.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | ENST00000615535.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | ENST00000615535.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | ENST00000615535.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | ENST00000615535.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | ENST00000617833.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | ENST00000617833.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | ENST00000617833.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | NR_117096.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | NR_117096.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | NR_117096.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | NR_117096.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC1800007304.hg.1 | NR_117096.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1800149978.hg.1 | ENST00000516183.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1800149978.hg.1 | ENST00000615535.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1800149978.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1800149978.hg.1 | TC1800007304.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR1800149978.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1800149978.hg.1 | ENST00000516183.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1800149978.hg.1 | ENST00000615535.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1800149980.hg.1 | ENST00000516330.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1800149980.hg.1 | ENST00000615535.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1800149980.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1800149980.hg.1 | TC1800007304.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR1800149980.hg.1 | ENST00000516330.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1800149980.hg.1 | ENST00000615535.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1800149980.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | ENST00000516183.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | ENST00000516330.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | ENST00000589499.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | ENST00000589499.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | ENST00000589499.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | ENST00000589499.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | ENST00000589499.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | ENST00000615535.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | ENST00000615535.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | ENST00000615535.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | ENST00000615535.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | ENST00000615535.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | ENST00000617833.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | ENST00000617833.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | ENST00000617833.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | NR_117096.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | NR_117096.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | NR_117096.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | NR_117096.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC1800007304.hg.1 | NR_117096.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1800149977.hg.1 | ENST00000615535.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1800149977.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1800149977.hg.1 | TC1800007304.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR1800149977.hg.1 | ENST00000615535.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1800149977.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1800149979.hg.1 | ENST00000615535.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1800149979.hg.1 | NR_003003.2 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1800149979.hg.1 | TC1800007304.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR1800149979.hg.1 | ENST00000615535.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1800149979.hg.1 | NR_003003.2 | Refseq |
| Human Genome U133 Plus 2.0 Array | 240830_PM_at | - | - |
| Human Genome U133 Plus 2.0 Array | 240830_at | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 240830_at3 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 240830_at1 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 240830_at7 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 240830_at5 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 240830_at9 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 240830_at2 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 240830_at6 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 240830_at11 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 240830_at4 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 240830_at10 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 240830_at8 | - | - |
| Human Genome U133 Set | 240830_PM_at | - | - |
| Human Genome U133 Set | 240830_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A010649 | - | - |
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A010649 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| HumanHT-12 v4 Expression BeadChip | ILMN_3245822 | NR_003003.2 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3245822 | NR_003003.2 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3245822 | NR_003003.2 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3245822 | NR_003003.2 | human_transcriptome |
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