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- Gene Symbol:
-
SCARNA5 - Gene Name:
- small Cajal body-specific RNA 5
- Gene Aliases:
- U87
- Chromosome Location:
- Chr.2: 233275726 - 233276003 on Build GRCh38
- Species:
- Human
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: SCARNA5 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NR_003008.2 | 1 | 56 | 85 | ||
| GenBank mRNA | AY077737.1 | - | 1 | 85 | ||
Adjacent Gene Details
| Gene name | Gene Symbol | Alias | Distance | Relative Direction | Location Chromsome | |
|---|---|---|---|---|---|---|
| Upstream | autophagy related 16 like 1 | ATG16L1 |
APG16L, ATG16A, ATG16L, IBD10, WDR30 |
Sense | Chr. 2 - 233251571 - 233295674 on NCBI Build GRCh38 | |
| Downstream | small Cajal body-specific RNA 6 | SCARNA6 | U88 | 12.7kb | Sense | Chr. 2 - 233288676 - 233288941 on NCBI Build GRCh38 |
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as Clariom D transcript cluster(s) TC0200011126.hg.1This assay targets the same location as HTA transcript cluster(s) TC02001416.hg.1
Set Membership: |
Amplicon length between 71 and 85
3' Most
Detect Genomic DNA
Homo sapiens
Both primers and probe map within a single exon
|
MicroArray Probes:
Agilent
Affymetrix
ArrayStar
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Human Genome Microarray 4x44K v2 | A_33_P3363082 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4030 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_HS_44k_4031 | - | - |
| Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray | 54427 | - | - |
| Agilent Whole Human Genome Microarray 4x44K v2 | A_33_P3363082 | - | - |
| SurePrint G3 Human GE Microarray G4851A | A_33_P3363082 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P15394132 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P15394137 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966524 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966470 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966508 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966480 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093801 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966472 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093826 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093834 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966515 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093780 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966514 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093830 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093789 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093779 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093783 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966504 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966507 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093805 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P15394135 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093792 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966475 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966483 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966474 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093787 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966520 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093815 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093797 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966496 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093829 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093778 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093772 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093808 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093814 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093823 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966484 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093802 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093790 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093795 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966496 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093830 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093787 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966515 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093808 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P15394132 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966474 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966524 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093802 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093783 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093789 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966484 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P15394137 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966504 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966480 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966483 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093778 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966514 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093772 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093779 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093815 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093814 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966470 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093790 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093805 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093797 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093795 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093780 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966475 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093792 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093829 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966520 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093823 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P15394135 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093801 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966508 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093834 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P22093826 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966507 | - | - |
| Agilent SurePrint G3 Human Promoter Microarray 1x1M | A_17_P01966472 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966601 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966507 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966508 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966469 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966465 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966586 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966519 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966590 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15394137 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966513 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966467 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966483 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966525 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966478 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966599 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966582 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966595 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966495 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15394142 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15394132 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966593 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966491 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966515 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966506 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966486 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966472 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966510 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P15394133 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966489 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966493 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966511 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966480 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966474 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966503 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966476 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966487 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966516 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966524 | - | - |
| Agilent Human Whole Genome ChIP-on-Chip | A_17_P01966588 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Human Gene 1.0 ST Array | NR_003008_at | - | - |
| Affymetrix Human Gene 1.0 ST Array | 8049298 | - | - |
| Affymetrix Human Gene 1.1 ST Array | 8049297 | - | - |
| Affymetrix Human Transcriptome Array 2.0 | PSR02022562.hg.1 | ENST00000516201.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | PSR02022562.hg.1 | NR_003008.2 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR02022562.hg.1 | TC02001416.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | TC0200011126.hg.1 | ENST00000516201.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC0200011126.hg.1 | NR_003008.2 | Refseq |
| Affymetrix Human Clariom D Assay | TC0200011126.hg.1 | ENST00000516201.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC0200011126.hg.1 | NR_003008.2 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0200180235.hg.1 | ENST00000516201.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR0200180235.hg.1 | NR_003008.2 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0200180235.hg.1 | TC0200011126.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR0200180235.hg.1 | NR_003008.2 | Refseq |
| Affymetrix Human Clariom D Assay | PSR0200180235.hg.1 | ENST00000516201.1 | Ensembl |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A017114 | - | - |
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A017114 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| HumanHT-12 v4 Expression BeadChip | ILMN_3236408 | NR_003008.2 | human_transcriptome |
| HumanHT-12 V4.0 expression beadchip | ILMN_3236408 | NR_003008.2 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 expression beadchip | ILMN_3236408 | NR_003008.2 | human_transcriptome |
| Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip | ILMN_3236408 | NR_003008.2 | human_transcriptome |
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