Assay Details

Gene Symbol: ATXN3L
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001135995.1	NP_001129467.1	1	244		116
GenBank mRNA	AK302365.1	-	1	246		116
GenBank mRNA	DB059638.1	-	1	246		116

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	uncharacterized LOC105373133	LOC105373133		-178.0kb	Anti-sense	Chr. X - 13044544 - 13086975 on NCBI Build GRCh38
Downstream	long intergenic non-protein coding RNA 1203	LINC01203		14.8kb	Anti-sense	Chr. X - 13335241 - 13341825 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0X00009095.hg.1
This assay targets the same location as HTA transcript cluster(s) TC0X000866.hg.1

Additional Information:

This assay is in the 5'UTR region of the AK302365.1, NM_001135995.1 transcripts.

Set Membership:

Amplicon length greater than or equal to 101

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR0X011515.hg.1	ENST00000380622.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X011515.hg.1	NM_001135995.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR0X011515.hg.1	TC0X000866.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC0X00009095.hg.1	ENST00000380622.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009095.hg.1	ENST00000380622.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009095.hg.1	ENST00000380622.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009095.hg.1	ENST00000380622.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009095.hg.1	ENST00000380622.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009095.hg.1	ENST00000380622.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009095.hg.1	ENST00000380622.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009095.hg.1	ENST00000622204.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009095.hg.1	ENST00000622204.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00009095.hg.1	NM_001135995.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009095.hg.1	NM_001135995.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009095.hg.1	NM_001135995.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009095.hg.1	NM_001135995.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009095.hg.1	NM_001135995.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009095.hg.1	NM_001135995.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009095.hg.1	NM_001135995.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00009095.hg.1	NM_001135995.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR0X011513.hg.1	ENST00000380622.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X011513.hg.1	NM_001135995.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR0X011513.hg.1	TC0X000866.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR0X011514.hg.1	ENST00000380622.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR0X011514.hg.1	NM_001135995.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR0X011514.hg.1	TC0X000866.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00162305.hg.1	ENST00000380622.3	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00162305.hg.1	NM_001135995.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00162305.hg.1	TC0X00009095.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0X00162305.hg.1	NM_001135995.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00162305.hg.1	ENST00000380622.3	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00162306.hg.1	ENST00000380622.3	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00162306.hg.1	ENST00000622204.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00162306.hg.1	NM_001135995.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00162306.hg.1	TC0X00009095.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0X00162306.hg.1	ENST00000380622.3	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00162306.hg.1	ENST00000622204.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0X00162306.hg.1	NM_001135995.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00162309.hg.1	NM_001135995.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00162309.hg.1	TC0X00009095.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0X00162309.hg.1	NM_001135995.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	ENST00000431486.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00006643.hg.1	NR_046087.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00009095.hg.1	ENST00000380622.3	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009095.hg.1	ENST00000380622.3	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009095.hg.1	ENST00000380622.3	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009095.hg.1	ENST00000380622.3	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009095.hg.1	ENST00000380622.3	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009095.hg.1	ENST00000380622.3	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009095.hg.1	ENST00000380622.3	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009095.hg.1	ENST00000622204.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009095.hg.1	ENST00000622204.1	Ensembl
Affymetrix Human Clariom D Assay	TC0X00009095.hg.1	NM_001135995.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00009095.hg.1	NM_001135995.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00009095.hg.1	NM_001135995.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00009095.hg.1	NM_001135995.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00009095.hg.1	NM_001135995.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00009095.hg.1	NM_001135995.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00009095.hg.1	NM_001135995.1	Refseq
Affymetrix Human Clariom D Assay	TC0X00009095.hg.1	NM_001135995.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00162308.hg.1	NM_001135995.1	Refseq
Affymetrix Human Clariom D Assay	PSR0X00162308.hg.1	TC0X00009095.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0X00162308.hg.1	NM_001135995.1	Refseq

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Catalog #	4426961
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System Message

Genomic Map