Name: [Hs03309407_m1] [NPHP3-AS1]
Creator: Thermo Fisher Scientific
Keywords: [NPHP3-AS1] Assay, [NPHP3 antisense RNA 1] Assay

Assay Details

Gene Symbol: NPHP3-AS1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_002811.1		4 - 5	330		91
GenBank mRNA	BC039375.1	-	4 - 5	330		91
GenBank mRNA	BC048124.1	-	4 - 5	329		91

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	BI464882.1	-	4 - 5	332		Chr. 3 - 132722342 - 132812770 [+] on Build GRCh38	91
GenBankmRNA	BI464888.1	-	4 - 5	335		Chr. 3 - 132722342 - 132812877 [+] on Build GRCh38	91

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	NPHP3-ACAD11 readthrough (NMD candidate)	NPHP3-ACAD11		-71.1kb	Anti-sense	Chr. 3 - 132558138 - 132722459 on NCBI Build GRCh38
Downstream	transmembrane protein 108	TMEM108	CT124	237.9kb	Sense	Chr. 3 - 133038288 - 133397775 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0300008850.hg.1
This assay targets the same location as HTA transcript cluster(s) TC03000718.hg.1

Set Membership:

Amplicon length between 86 and 100

Mammalian Gene Collection

Homo sapiens

Probe spans exons

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR03012950.hg.1	ENST00000463373.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03012950.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03012950.hg.1	ENST00000503298.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03012950.hg.1	NR_002811.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03012950.hg.1	TC03000718.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR03012956.hg.1	ENST00000463373.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03012956.hg.1	NR_002811.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03012956.hg.1	TC03000718.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03012955.hg.1	ENST00000463373.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03012955.hg.1	NR_002811.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03012955.hg.1	TC03000718.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR03012948.hg.1	ENST00000463373.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03012948.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03012948.hg.1	ENST00000503298.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03012948.hg.1	NR_002811.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03012948.hg.1	TC03000718.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR03012954.hg.1	ENST00000463373.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03012954.hg.1	NR_002811.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03012954.hg.1	TC03000718.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR03012951.hg.1	ENST00000463373.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03012951.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03012951.hg.1	ENST00000503298.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03012951.hg.1	NR_002811.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03012951.hg.1	TC03000718.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR0300163235.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163235.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163235.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163235.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300163235.hg.1	TC0300008850.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0300163235.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163235.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163235.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163235.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300163233.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163233.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163233.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163233.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300163233.hg.1	TC0300008850.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0300163233.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163233.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163233.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163233.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300163239.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163239.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300163239.hg.1	TC0300008850.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0300163239.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163239.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300163240.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163240.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300163240.hg.1	TC0300008850.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0300163240.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163240.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	TC0300008850.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300163236.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163236.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163236.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163236.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300163236.hg.1	TC0300008850.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0300163236.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163236.hg.1	ENST00000489343.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163236.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163236.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300163241.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163241.hg.1	NR_002811.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300163241.hg.1	TC0300008850.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0300163241.hg.1	ENST00000504440.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0300163241.hg.1	NR_002811.1	Refseq

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Catalog #	4426961
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Genomic Map