Name: [Hs03309518_s1] [SNORD99]
Creator: Thermo Fisher Scientific
Keywords: [SNORD99] Assay, [small nucleolar RNA, C/D box 99] Assay

Assay Details

Gene Symbol: SNORD99
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_003077.1		1	43		73

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	BU075138.1	-	1		Chr. 1 - 28578538 - 28579068 [+] on Build GRCh38	73
GenBankmRNA	CB119876.1	-	1		Chr. 1 - 28578536 - 28578892 [+] on Build GRCh38	73
GenBankmRNA	BM263047.1	-	1	454	Chr. 1 - 28578708 - 28579217 [-] on Build GRCh38	73
GenBankmRNA	AA417948.1	-	1		Chr. 1 - 28578538 - 28578950 [+] on Build GRCh38	73
GenBankmRNA	BU075449.1	-	1	325	Chr. 1 - 28578607 - 28579104 [-] on Build GRCh38	73
GenBankmRNA	BM747774.1	-	1	134	Chr. 1 - 28578538 - 28578912 [-] on Build GRCh38	73
GenBankmRNA	CA430974.1	-	1		Chr. 1 - 28578541 - 28579175 [+] on Build GRCh38	73
GenBankmRNA	BX116925.1	-	2	622	Chr. 1 - 28578631 - 28841889 [-] on Build GRCh38	73
GenBankmRNA	BU675242.1	-	1		Chr. 1 - 28578536 - 28579264 [+] on Build GRCh38	73
GenBankmRNA	AI401149.1	-	1		Chr. 1 - 28578539 - 28578934 [+] on Build GRCh38	73
GenBankmRNA	BM142620.1	-	1		Chr. 1 - 28578538 - 28579044 [+] on Build GRCh38	73

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	small nucleolar RNA host gene 12	SNHG12	ASLNC04080, C1orf79, LINC00100, NCRNA00100		Sense	Chr. 1 - 28578538 - 28581854 on NCBI Build GRCh38
Downstream	small nucleolar RNA, H/ACA box 61	SNORA61	ACA61	942.0	Sense	Chr. 1 - 28579764 - 28579893 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0100013482.hg.1
This assay targets the same location as HTA transcript cluster(s) TC01002426.hg.1

Set Membership:

Amplicon length between 71 and 85

3' Most

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

MicroArray Probes:

Agilent Affymetrix Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_HS_44k_4097	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130327	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15043231	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15043230	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130326	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130326	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P20130327	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15043230	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15043231	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108541	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108538	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108546	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108536	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108526	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15043231	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108543	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15043232	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108545	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15043236	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108524	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P00108528	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15043230	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0100013482.hg.1	ENST00000408612.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100013482.hg.1	NR_003077.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR01037393.hg.1	ENST00000408612.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR01037393.hg.1	NR_003077.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR01037393.hg.1	TC01002426.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR0100200142.hg.1	ENST00000408612.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0100200142.hg.1	NR_003077.1	Refseq
Affymetrix Human Clariom D Assay	PSR0100200142.hg.1	TC0100013482.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0100200142.hg.1	NR_003077.1	Refseq
Affymetrix Human Clariom D Assay	PSR0100200142.hg.1	ENST00000408612.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100013482.hg.1	ENST00000408612.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100013482.hg.1	NR_003077.1	Refseq
Human Genome U95 Set	43688_PM_at	-	-
Human Genome U95 Set	43688_at	-	-

Availability	Made To Order
Catalog #	4426961
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Array Name	Probe IDs	Targets	Target Type
HumanHT-12 v4 Expression BeadChip	ILMN_3248703	NR_003077.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_3248703	NR_003077.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_3248703	NR_003077.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_3248703	NR_003077.1	human_transcriptome

System Message

Genomic Map