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- Gene Symbol:
-
LOC554206 - Gene Name:
- leucine carboxyl methyltransferase 1 pseudogene
- Gene Aliases:
- -
- Chromosome Location:
- Chr.16: 25031741 - 25032777 on Build GRCh38
- Species:
- Human
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: LOC554206 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NR_038379.1 | 1 | 51 | 91 | ||
| GenBank mRNA | BC029609.1 | - | 1 | 48 | 91 | |
| DB115487.1 | - | 1 | 51 | 91 | ||
Adjacent Gene Details
| Gene name | Gene Symbol | Alias | Distance | Relative Direction | Location Chromsome | |
|---|---|---|---|---|---|---|
| Upstream | thyroid hormone receptor interactor 11 pseudogene | LOC100421171 | -9.4kb | Sense | Chr. 16 - 25015978 - 25022380 on NCBI Build GRCh38 | |
| Downstream | uncharacterized LOC283887 | LOC283887 | 34.3kb | Sense | Chr. 16 - 25066887 - 25068955 on NCBI Build GRCh38 |
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as Clariom D transcript cluster(s) TC1600007268.hg.1This assay targets the same location as HTA transcript cluster(s) TC16000266.hg.1
Set Membership: |
Amplicon length between 86 and 100
3' Most
Mammalian Gene Collection
Detect Genomic DNA
Homo sapiens
1700
Both primers and probe map within a single exon
|
MicroArray Probes:
Agilent
Affymetrix
ArrayStar
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968595 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968618 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P30492988 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968601 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968606 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P30492956 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968603 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968610 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P30492947 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P30492984 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968626 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P30492967 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968628 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P30492966 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968608 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968612 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968624 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968633 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P30492983 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968607 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968632 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968600 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968609 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P30492965 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968627 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P30492982 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P30492970 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P30492981 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968611 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968623 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968597 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968614 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968591 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968592 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968605 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968625 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P30492968 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968621 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968620 | - | - |
| Agilent Human Whole Genome ChIP Tiling Array | A_17_P09968599 | - | - |
| Agilent SurePrint G3 Human CGH Microarray 4x180K | 2079 | - | - |
| Agilent SurePrint G3 Human CGH Microarray 8x60K | 42717 | - | - |
| Agilent SurePrint G3 Human High-Resolution Discovery Microarray 1x1M | 142908 | - | - |
| Agilent SurePrint G3 Human High-Resolution Discovery Microarray 1x1M | 877097 | - | - |
| Agilent SurePrint G3 Human High-Resolution Discovery Microarray 1x1M | 474077 | - | - |
| Agilent SurePrint G3 Human CNV Microarray 2x400K | 276 | - | - |
| Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k | GT_44k_23_P434040 | - | - |
| Agilent Whole Human Genome Oligo Microarray 4x44K | 34218 | - | - |
| Agilent Human Genome CGH Microarray 44B | A_14_P124057 | - | - |
| Agilent Human Genome CGH Microarray 44A | A_14_P124057 | - | - |
| Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray | 2275 | - | - |
| Agilent Human Genome CGH + SNP Microarray | A_14_P124057 | - | - |
| Agilent Whole Human Genome Microarray 4x44K v2 | A_33_P3294966 | - | - |
| Whole Human Genome Oligo Microarray G4112A | A_23_P434040 | - | - |
| Agilent Human Genome CGH Microarray 105A (G4412A) | A_14_P124057 | - | - |
| Agilent Human Genome 244K CGH Microarray (Alpha Test) | A_14_P124057 | - | - |
| Agilent Human Genome CGH Microarray 4x44K | A_14_P124057 | - | - |
| Agilent Whole Human Genome Microarray 4x44K G4112F | A_23_P434040 | - | - |
| Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522 | 156433 | AF085481.1 | genbank_mrna_human |
| Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522 | 156433 | AK026943.1 | genbank_mrna_human |
| Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522 | 156433 | AK290378.1 | genbank_mrna_human |
| Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522 | 156433 | BC016475.1 | genbank_mrna_human |
| Agilent SurePrint G3 CGH array (4X180K) CCA_VUMC design AMADID#022522 | 156433 | NM_004657.4 | refseq_mrna_human_NM |
| Agilent HD CGH Microarray (2X105K) Oxford design AMADID#019015 | 97153 | - | - |
| Agilent Human CGH Whole Genome Microarray 1x1M (G4447A) | A_14_P124057 | - | - |
| Agilent Human CGH Whole Genome Microarray 1x1M (G4447A) | A_16_P03129520 | - | - |
| Agilent SurePrint G3 Human CGH Microarray 2x400K | A_14_P124057 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Human Gene 1.0 ST Array | 7994236 | - | - |
| Affymetrix Human Gene 1.1 ST Array | 7994235 | - | - |
| Affymetrix HT HG-U133+ PM Array Plate | 1554187_PM_at | - | - |
| Affymetrix HT HG-U133+ PM Array Plate | 1554185_PM_at | - | - |
| Affymetrix Human Transcriptome Array 2.0 | PSR16003989.hg.1 | NR_038379.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | PSR16003989.hg.1 | TC16000266.hg.1 | HTA TC |
| Affymetrix Human Transcriptome Array 2.0 | TC1600007268.hg.1 | ENST00000575694.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1600007268.hg.1 | ENST00000575694.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1600007268.hg.1 | ENST00000619106.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1600007268.hg.1 | ENST00000619106.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1600007268.hg.1 | ENST00000619106.1 | Ensembl |
| Affymetrix Human Transcriptome Array 2.0 | TC1600007268.hg.1 | NR_038379.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC1600007268.hg.1 | NR_038379.1 | Refseq |
| Affymetrix Human Transcriptome Array 2.0 | TC1600007268.hg.1 | NR_038379.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1600152373.hg.1 | ENST00000575694.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1600152373.hg.1 | ENST00000619106.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1600152373.hg.1 | NR_038379.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1600152373.hg.1 | TC1600007268.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR1600152373.hg.1 | ENST00000575694.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1600152373.hg.1 | ENST00000619106.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1600152373.hg.1 | NR_038379.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC1600007268.hg.1 | ENST00000575694.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1600007268.hg.1 | ENST00000575694.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1600007268.hg.1 | ENST00000619106.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1600007268.hg.1 | ENST00000619106.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1600007268.hg.1 | ENST00000619106.1 | Ensembl |
| Affymetrix Human Clariom D Assay | TC1600007268.hg.1 | NR_038379.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC1600007268.hg.1 | NR_038379.1 | Refseq |
| Affymetrix Human Clariom D Assay | TC1600007268.hg.1 | NR_038379.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1600152374.hg.1 | ENST00000619106.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1600152374.hg.1 | NR_038379.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1600152374.hg.1 | TC1600007268.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR1600152374.hg.1 | ENST00000619106.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1600152374.hg.1 | NR_038379.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1600152372.hg.1 | ENST00000619106.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1600152372.hg.1 | NR_038379.1 | Refseq |
| Affymetrix Human Clariom D Assay | PSR1600152372.hg.1 | TC1600007268.hg.1 | Clariom D TC |
| Affymetrix Human Clariom D Assay | PSR1600152372.hg.1 | ENST00000619106.1 | Ensembl |
| Affymetrix Human Clariom D Assay | PSR1600152372.hg.1 | NR_038379.1 | Refseq |
| Human Genome U133 Plus 2.0 Array | 1554185_PM_at | - | - |
| Human Genome U133 Plus 2.0 Array | 1554187_PM_at | - | - |
| Human Genome U133 Plus 2.0 Array | 1554187_at | - | - |
| Human Genome U133 Plus 2.0 Array | 1554185_at | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554187_at10 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554187_at11 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554185_at9 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554187_at7 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554187_at3 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554187_at4 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554185_at1 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554185_at8 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554187_at2 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554185_at2 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554185_at10 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554187_at5 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554185_at4 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554185_at5 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554187_at6 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554185_at6 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554187_at1 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554187_at9 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554185_at11 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554185_at3 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554187_at8 | - | - |
| Affymetrix Human Genome U133 Plus 2.0 Array | 1554185_at7 | - | - |
| Human Genome U95 Set | 92033_at | - | - |
| Human Genome U95 Set | 92033_PM_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A054402 | - | - |
| Arraystar Human LncRNA microarray V2.0 | ASHG19A3A054402 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Human Genome Survey Microarray Version 2.0 | 694208 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| HumanHT-12 v4 Expression BeadChip | ILMN_1690036 | BC029609.1 | human_transcriptome |
| HumanHT-12 v4 Expression BeadChip | ILMN_1690036 | NR_038379.1 | human_transcriptome |
| HumanHT-12 v4 Expression BeadChip | ILMN_1690036 | AI553759.1 | human_transcriptome |
| HumanHT-12 v4 Expression BeadChip | ILMN_1690036 | AI696363.1 | human_transcriptome |
| HumanHT-12 v4 Expression BeadChip | ILMN_1690036 | AK097891.1 | human_transcriptome |
| Illumina HumanWG-6 v2.0 expression beadchip | ILMN_1754134 | - | - |
| Illumina human-6 v2.0 expression beadchip | ILMN_1754134 | - | - |
| Illumina HumanWG-6 v3.0 expression beadchip | ILMN_1690036 | BC029609.1 | human_transcriptome |
| Illumina HumanWG-6 v3.0 expression beadchip | ILMN_1690036 | NR_038379.1 | human_transcriptome |
| Illumina HumanWG-6 v3.0 expression beadchip | ILMN_1690036 | AI553759.1 | human_transcriptome |
| Illumina HumanWG-6 v3.0 expression beadchip | ILMN_1690036 | AI696363.1 | human_transcriptome |
| Illumina HumanWG-6 v3.0 expression beadchip | ILMN_1690036 | AK097891.1 | human_transcriptome |
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