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          • Home
          • › Search Tool
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          • › Hs03681477_m1
          See other CALCOCO1 GE Assays ›
          Gene Symbol:
          CALCOCO1
          Gene Name:
          calcium binding and coiled-coil domain 1
          Gene Aliases:
          Cocoa, PP13275, calphoglin
          Chromosome Location:
          Chr.12: 53711118 - 53727523 on Build GRCh38
          Species:
          Human
          Species Specific ID (Flybase ID):
          -
          Assay ID Hs03681477_m1
          Size
          Availability Made To Order
          Catalog # 4426961
          Price
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: CALCOCO1
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NR_026554.1 2 - 3 300 95
          GenBank mRNA AK296497.1 - 2 - 3 229 95
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
          GenBankmRNA DC390027.1 - 2 - 3 229 Chr. 12 - 53722022 - 53727452 [-] on Build GRCh38 95
          GenBankmRNA DC407608.1 - 2 - 3 229 Chr. 12 - 53722061 - 53727452 [-] on Build GRCh38 95
          GenBankmRNA DC308821.1 - 2 - 3 221 Chr. 12 - 53722046 - 53727443 [-] on Build GRCh38 95
          GenBankmRNA DC306790.1 - 2 - 3 229 Chr. 12 - 53722049 - 53727452 [-] on Build GRCh38 95
          GenBankmRNA BP328880.1 - 2 - 3 234 Chr. 12 - 53722027 - 53727457 [-] on Build GRCh38 95
          GenBankmRNA DC352601.1 - 2 - 3 229 Chr. 12 - 53722060 - 53727452 [-] on Build GRCh38 95
          GenBankmRNA DC344416.1 - 2 - 3 234 Chr. 12 - 53722055 - 53727457 [-] on Build GRCh38 95
          GenBankmRNA DC407630.1 - 2 - 3 229 Chr. 12 - 53722055 - 53727452 [-] on Build GRCh38 95
          GenBankmRNA BP311774.1 - 2 - 3 228 Chr. 12 - 53722022 - 53727452 [-] on Build GRCh38 95
          GenBankmRNA DC408691.1 - 2 - 3 231 Chr. 12 - 53722060 - 53727453 [-] on Build GRCh38 95
          GenBankmRNA DC343823.1 - 2 - 3 229 Chr. 12 - 53722055 - 53727452 [-] on Build GRCh38 95
          GenBankmRNA EL594823.1 - 3 - 4 Chr. 12 - 53721543 - 53725182 [+] on Build GRCh38 95
          GenBankmRNA BP328837.1 - 2 - 3 234 Chr. 12 - 53722031 - 53727457 [-] on Build GRCh38 95
          GenBankmRNA DC339879.1 - 2 - 3 223 Chr. 12 - 53722041 - 53727446 [-] on Build GRCh38 95
          GenBankmRNA DC422955.1 - 2 - 3 223 Chr. 12 - 53722054 - 53727446 [-] on Build GRCh38 95
          GenBankmRNA DC423207.1 - 2 - 3 229 Chr. 12 - 53722058 - 53727452 [-] on Build GRCh38 95

          Adjacent Gene Details

          Gene name Gene Symbol Alias Distance Relative Direction Location Chromsome
          Upstream ATP synthase,
          H+ transporting,
          mitochondrial Fo complex subunit C2 (subunit 9)
          ATP5G2 ATP5A -46.9kb Sense Chr. 12 - 53665160 - 53677546 on NCBI Build GRCh38
          Downstream chondrogenesis-associated transcript CISTR CISTR-ACT,
          CISTRACT,
          re52431
          25.2kb Sense Chr. 12 - 53750447 - 53757034 on NCBI Build GRCh38

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          More Information


          Additional Information:

          This assay is in the 5'UTR region of the AK296497.1 transcripts.

          Set Membership:

          Amplicon length between 86 and 100 Homo sapiens Probe spans exons

          Gene Ontology Categories:

          Function(s) Process(es)

          transcription, DNA-templated
          signal transduction
          positive regulation of gene expression
          Wnt signaling pathway
          intracellular steroid hormone receptor signaling pathway
          positive regulation of transcription, DNA-templated
          positive regulation of transcription by RNA polymerase II
          transcription cis-regulatory region binding
          core promoter sequence-specific DNA binding
          chromatin binding
          transcription coregulator activity
          transcription coactivator activity
          protein binding
          beta-catenin binding
          protein C-terminus binding
          nuclear receptor coactivator activity
          sequence-specific DNA binding
          armadillo repeat domain binding

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