Name: [Hs04231941_m1] [VPS9D1-AS1]
Creator: Thermo Fisher Scientific
Keywords: [VPS9D1-AS1] Assay, [VPS9D1 antisense RNA 1] Assay

Assay Details

Gene Symbol: VPS9D1-AS1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_036480.1		2 - 3	496		77
GenBank mRNA	AK096286.1	-	2 - 3	497		77

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	BM909691.1	-		270	Chr. - - [-] on Build	77
GenBankmRNA	HY258205.1	-	2 - 3	418	Chr. 16 - 89711972 - 89716565 [+] on Build GRCh38	77
GenBankmRNA	BF311827.1	-	2 - 3	461	Chr. 16 - 89711890 - 89716778 [+] on Build GRCh38	77
GenBankmRNA	BF315011.1	-	2 - 3	464	Chr. 16 - 89711890 - 89716755 [+] on Build GRCh38	77
GenBankmRNA	BE312532.1	-	2 - 3	445	Chr. 16 - 89711908 - 89716625 [+] on Build GRCh38	77
GenBankmRNA	DA604994.1	-	2 - 3	460	Chr. 16 - 89711890 - 89716555 [+] on Build GRCh38	77

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	spermatogenesis associated 2 like	SPATA2L	C16orf76, tamo	-11.0kb	Anti-sense	Chr. 16 - 89696357 - 89701993 on NCBI Build GRCh38
Downstream	zinc finger protein 276	ZNF276	CENP-Z, CENPZ, ZADT, ZFP276, ZNF477	3.3kb	Sense	Chr. 16 - 89720368 - 89740925 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1600008898.hg.1
This assay targets the same location as HTA transcript cluster(s) TC16000704.hg.1

Set Membership:

Amplicon length between 71 and 85

Homo sapiens

Probe spans exons

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC1600008898.hg.1	ENST00000562298.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600008898.hg.1	ENST00000562298.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600008898.hg.1	ENST00000562866.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600008898.hg.1	ENST00000562866.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600008898.hg.1	ENST00000562866.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600008898.hg.1	ENST00000562866.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600008898.hg.1	ENST00000562866.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600008898.hg.1	ENST00000562866.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1600008898.hg.1	NR_036480.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1600008898.hg.1	NR_036480.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1600008898.hg.1	NR_036480.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1600008898.hg.1	NR_036480.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1600008898.hg.1	NR_036480.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1600008898.hg.1	NR_036480.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR16010007.hg.1	NR_036480.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR16010007.hg.1	TC16000704.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR16010008.hg.1	NR_036480.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR16010008.hg.1	TC16000704.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR16010009.hg.1	NR_036480.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR16010009.hg.1	TC16000704.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1600166607.hg.1	ENST00000562866.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600166607.hg.1	NR_036480.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600166607.hg.1	TC1600008898.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1600166607.hg.1	NR_036480.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600166607.hg.1	ENST00000562866.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600008898.hg.1	ENST00000562298.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600008898.hg.1	ENST00000562298.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600008898.hg.1	ENST00000562866.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600008898.hg.1	ENST00000562866.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600008898.hg.1	ENST00000562866.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600008898.hg.1	ENST00000562866.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600008898.hg.1	ENST00000562866.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600008898.hg.1	ENST00000562866.1	Ensembl
Affymetrix Human Clariom D Assay	TC1600008898.hg.1	NR_036480.1	Refseq
Affymetrix Human Clariom D Assay	TC1600008898.hg.1	NR_036480.1	Refseq
Affymetrix Human Clariom D Assay	TC1600008898.hg.1	NR_036480.1	Refseq
Affymetrix Human Clariom D Assay	TC1600008898.hg.1	NR_036480.1	Refseq
Affymetrix Human Clariom D Assay	TC1600008898.hg.1	NR_036480.1	Refseq
Affymetrix Human Clariom D Assay	TC1600008898.hg.1	NR_036480.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600166606.hg.1	ENST00000562298.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600166606.hg.1	ENST00000562866.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600166606.hg.1	NR_036480.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600166606.hg.1	TC1600008898.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1600166606.hg.1	ENST00000562298.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600166606.hg.1	ENST00000562866.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600166606.hg.1	NR_036480.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600166605.hg.1	ENST00000562866.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600166605.hg.1	NR_036480.1	Refseq
Affymetrix Human Clariom D Assay	PSR1600166605.hg.1	TC1600008898.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1600166605.hg.1	ENST00000562866.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1600166605.hg.1	NR_036480.1	Refseq

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Catalog #	4426961
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