Name: [Hs04233385_m1] [COL6A4P1]
Creator: Thermo Fisher Scientific
Keywords: [COL6A4P1] Assay, [collagen type VI alpha 4 pseudogene 1] Assay

Assay Details

Gene Symbol: COL6A4P1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_027927.1		1 - 2	249		89
GenBank mRNA	AB299979.1	-	1 - 2	249		89

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	rabenosyn, RAB effector	RBSN	Rabenosyn-5, ZFYVE20	-78.4kb	Sense	Chr. 3 - 15070069 - 15099163 on NCBI Build GRCh38
Downstream	calpain 7	CAPN7	CALPAIN7, PALBH	267.0	Anti-sense	Chr. 3 - 15206226 - 15252916 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0300010395.hg.1
This assay targets the same location as HTA transcript cluster(s) TC03001205.hg.1

Additional Information:

This assay is in the 5'UTR region of the AB299979.1 transcripts.

Set Membership:

Amplicon length between 86 and 100

Homo sapiens

Probe spans exons

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000491915.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000491915.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000491915.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000508169.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000508169.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000508169.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000508169.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	ENST00000508169.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	NR_027927.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	NR_027927.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	NR_027927.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	NR_027927.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	NR_027927.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	NR_027927.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0300010395.hg.1	NR_027927.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03020652.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03020652.hg.1	NR_027927.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03020652.hg.1	TC03001205.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR03020650.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR03020650.hg.1	NR_027927.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR03020650.hg.1	TC03001205.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR0300175783.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0300175783.hg.1	NR_027927.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300175783.hg.1	TC0300010395.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0300175783.hg.1	NR_027927.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300175783.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000491915.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000491915.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000491915.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000508169.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000508169.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000508169.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000508169.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	ENST00000508169.1	Ensembl
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	NR_027927.1	Refseq
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	NR_027927.1	Refseq
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	NR_027927.1	Refseq
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	NR_027927.1	Refseq
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	NR_027927.1	Refseq
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	NR_027927.1	Refseq
Affymetrix Human Clariom D Assay	TC0300010395.hg.1	NR_027927.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300175781.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0300175781.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300175781.hg.1	NR_027927.1	Refseq
Affymetrix Human Clariom D Assay	PSR0300175781.hg.1	TC0300010395.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0300175781.hg.1	ENST00000446690.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0300175781.hg.1	ENST00000487147.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0300175781.hg.1	NR_027927.1	Refseq

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Catalog #	4426961
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Genomic Map