Name: [Hs04274462_m1] [PAXBP1-AS1]
Creator: Thermo Fisher Scientific
Keywords: [PAXBP1-AS1] Assay, [PAXBP1 antisense RNA 1] Assay

Assay Details

Gene Symbol: PAXBP1-AS1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_038880.1		1 - 2	2551		71
GenBank mRNA	AK056384.1	-	1 - 2	2550		71

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	AI299546.1	-	1 - 2		Chr. 21 - 32730629 - 32732908 [-] on Build GRCh38	71
GenBankmRNA	AI138823.1	-	1 - 2		Chr. 21 - 32730614 - 32732916 [-] on Build GRCh38	71
GenBankmRNA	BM668809.1	-	1 - 2		Chr. 21 - 32730388 - 32732918 [-] on Build GRCh38	71
GenBankmRNA	BM703828.1	-	1 - 2	417	Chr. 21 - 32730248 - 32732585 [+] on Build GRCh38	71

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	synaptojanin 1	SYNJ1	INPP5G, PARK20	-74.0	Anti-sense	Chr. 21 - 32628759 - 32728128 on NCBI Build GRCh38
Downstream	PAX3 and PAX7 binding protein 1	PAXBP1	BM020, C21orf66, FSAP105, GCFC, GCFC1	983.0	Anti-sense	Chr. 21 - 32733899 - 32771858 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC2100006939.hg.1
This assay targets the same location as HTA transcript cluster(s) TC21000120.hg.1

Set Membership:

Amplicon length between 71 and 85

3' Most

Homo sapiens

Probe spans exons

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	ENST00000455170.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	ENST00000455170.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	ENST00000455170.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	ENST00000458479.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	ENST00000458479.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	ENST00000458479.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	ENST00000458479.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	NR_038879.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	NR_038879.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	NR_038879.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	NR_038879.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	NR_038879.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	NR_038880.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	NR_038880.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	NR_038880.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC2100006939.hg.1	NR_038880.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR21000774.hg.1	TC21000120.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR21000774.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR21000774.hg.1	NR_038879.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR21000774.hg.1	NR_038880.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR21000775.hg.1	TC21000120.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR21000775.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR21000775.hg.1	NR_038879.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR21000775.hg.1	NR_038880.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR21000776.hg.1	TC21000120.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR21000776.hg.1	NR_038880.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100146549.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100146549.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100146549.hg.1	ENST00000458479.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100146549.hg.1	NR_038879.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100146549.hg.1	NR_038880.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100146549.hg.1	TC2100006939.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2100146549.hg.1	NR_038879.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100146549.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100146549.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100146549.hg.1	ENST00000458479.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100146549.hg.1	NR_038880.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100146550.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100146550.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100146550.hg.1	ENST00000455170.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100146550.hg.1	ENST00000458479.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100146550.hg.1	NR_038879.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100146550.hg.1	NR_038880.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100146550.hg.1	TC2100006939.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2100146550.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100146550.hg.1	ENST00000455170.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100146550.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100146550.hg.1	ENST00000458479.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100146550.hg.1	NR_038879.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100146550.hg.1	NR_038880.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100146551.hg.1	ENST00000458479.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100146551.hg.1	NR_038880.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100146551.hg.1	TC2100006939.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2100146551.hg.1	ENST00000458479.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100146551.hg.1	NR_038880.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100146552.hg.1	ENST00000458479.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100146552.hg.1	NR_038880.1	Refseq
Affymetrix Human Clariom D Assay	PSR2100146552.hg.1	TC2100006939.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR2100146552.hg.1	ENST00000458479.1	Ensembl
Affymetrix Human Clariom D Assay	PSR2100146552.hg.1	NR_038880.1	Refseq
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	ENST00000440052.1	Ensembl
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	ENST00000455170.1	Ensembl
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	ENST00000455170.1	Ensembl
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	ENST00000455170.1	Ensembl
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	ENST00000458479.1	Ensembl
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	ENST00000458479.1	Ensembl
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	ENST00000458479.1	Ensembl
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	ENST00000458479.1	Ensembl
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	NR_038879.1	Refseq
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	NR_038879.1	Refseq
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	NR_038879.1	Refseq
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	NR_038879.1	Refseq
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	NR_038879.1	Refseq
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	NR_038880.1	Refseq
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	NR_038880.1	Refseq
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	NR_038880.1	Refseq
Affymetrix Human Clariom D Assay	TC2100006939.hg.1	NR_038880.1	Refseq

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Catalog #	4426961
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