Name: [Hs04405068_m1] [LINC01543]
Creator: Thermo Fisher Scientific
Keywords: [LINC01543] Assay, [long intergenic non-protein coding RNA 1543] Assay

Assay Details

Gene Symbol: LINC01543
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_110762.1		1 - 2	331		78
GenBank mRNA	AI792351.1	-	1 - 2	331		78

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	DA632469.1	-	1 - 2	309		Chr. 18 - 26423017 - 26425222 [+] on Build GRCh38	78
GenBankmRNA	CB045893.1	-	1 - 2	320		Chr. 18 - 26423015 - 26425245 [+] on Build GRCh38	78

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	TATA-box binding protein associated factor 4b	TAF4B	SPGF13, TAF2C2, TAFII105	-31.3kb	Sense	Chr. 18 - 26226491 - 26391685 on NCBI Build GRCh38
Downstream	potassium channel tetramerization domain containing 1	KCTD1	C18orf5, SENS	29.8kb	Anti-sense	Chr. 18 - 26454910 - 26657401 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1800006941.hg.1

Set Membership:

Amplicon length between 71 and 85

Homo sapiens

Probe spans exons

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC1800006941.hg.1	ENST00000578367.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1800006941.hg.1	ENST00000578367.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1800006941.hg.1	ENST00000578367.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1800006941.hg.1	ENST00000578367.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1800006941.hg.1	ENST00000578367.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1800006941.hg.1	ENST00000578367.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1800006941.hg.1	NR_110762.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1800006941.hg.1	NR_110762.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1800006941.hg.1	NR_110762.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1800006941.hg.1	NR_110762.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1800006941.hg.1	NR_110762.1	Refseq
Affymetrix Human Clariom D Assay	PSR1800147698.hg.1	ENST00000578367.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800147698.hg.1	NR_110762.1	Refseq
Affymetrix Human Clariom D Assay	PSR1800147698.hg.1	TC1800006941.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1800147698.hg.1	NR_110762.1	Refseq
Affymetrix Human Clariom D Assay	PSR1800147698.hg.1	ENST00000578367.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800147700.hg.1	ENST00000578367.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800147700.hg.1	NR_110762.1	Refseq
Affymetrix Human Clariom D Assay	PSR1800147700.hg.1	TC1800006941.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1800147700.hg.1	ENST00000578367.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800147700.hg.1	NR_110762.1	Refseq
Affymetrix Human Clariom D Assay	PSR1800147699.hg.1	ENST00000578367.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800147699.hg.1	NR_110762.1	Refseq
Affymetrix Human Clariom D Assay	PSR1800147699.hg.1	TC1800006941.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1800147699.hg.1	ENST00000578367.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1800147699.hg.1	NR_110762.1	Refseq
Affymetrix Human Clariom D Assay	TC1800006941.hg.1	ENST00000578367.1	Ensembl
Affymetrix Human Clariom D Assay	TC1800006941.hg.1	ENST00000578367.1	Ensembl
Affymetrix Human Clariom D Assay	TC1800006941.hg.1	ENST00000578367.1	Ensembl
Affymetrix Human Clariom D Assay	TC1800006941.hg.1	ENST00000578367.1	Ensembl
Affymetrix Human Clariom D Assay	TC1800006941.hg.1	ENST00000578367.1	Ensembl
Affymetrix Human Clariom D Assay	TC1800006941.hg.1	ENST00000578367.1	Ensembl
Affymetrix Human Clariom D Assay	TC1800006941.hg.1	NR_110762.1	Refseq
Affymetrix Human Clariom D Assay	TC1800006941.hg.1	NR_110762.1	Refseq
Affymetrix Human Clariom D Assay	TC1800006941.hg.1	NR_110762.1	Refseq
Affymetrix Human Clariom D Assay	TC1800006941.hg.1	NR_110762.1	Refseq
Affymetrix Human Clariom D Assay	TC1800006941.hg.1	NR_110762.1	Refseq

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Catalog #	4426961
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Genomic Map