Name: [Hs04408210_m1] [LINC00540]
Creator: Thermo Fisher Scientific
Keywords: [LINC00540] Assay, [long intergenic non-protein coding RNA 540] Assay

Assay Details

Gene Symbol: LINC00540
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_103810.1		1 - 2	139		122
GenBank mRNA	BC035104.2	-	1 - 2	139		122

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	DB464936.1	-	1 - 2	139		Chr. 13 - 22210285 - 22274821 [+] on Build GRCh38	122
GenBankmRNA	BI548513.1	-	1 - 2	143		Chr. 13 - 22210285 - 22275078 [+] on Build GRCh38	122

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	long intergenic non-protein coding RNA 424	LINC00424		-332.1kb	Anti-sense	Chr. 13 - 21872796 - 21878160 on NCBI Build GRCh38
Downstream	long intergenic non-protein coding RNA 621	LINC00621		583.3kb	Anti-sense	Chr. 13 - 22859875 - 22896726 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1300006555.hg.1

Set Membership:

Amplicon length greater than or equal to 101

3' Most

Mammalian Gene Collection

Homo sapiens

Probe spans exons

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	ENST00000611481.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	ENST00000611481.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	ENST00000611481.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	ENST00000611481.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	ENST00000631321.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	ENST00000631321.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	ENST00000631321.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	ENST00000631321.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	ENST00000631321.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	NR_103810.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	NR_103810.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	NR_103810.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	NR_103810.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1300006555.hg.1	NR_103810.1	Refseq
Affymetrix Human Clariom D Assay	PSR1300144695.hg.1	ENST00000611481.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144695.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144695.hg.1	ENST00000631321.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144695.hg.1	NR_103810.1	Refseq
Affymetrix Human Clariom D Assay	PSR1300144695.hg.1	TC1300006555.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1300144695.hg.1	NR_103810.1	Refseq
Affymetrix Human Clariom D Assay	PSR1300144695.hg.1	ENST00000611481.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144695.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144695.hg.1	ENST00000631321.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144690.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144690.hg.1	NR_103810.1	Refseq
Affymetrix Human Clariom D Assay	PSR1300144690.hg.1	TC1300006555.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1300144690.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144690.hg.1	NR_103810.1	Refseq
Affymetrix Human Clariom D Assay	PSR1300144693.hg.1	ENST00000611481.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144693.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144693.hg.1	ENST00000631321.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144693.hg.1	NR_103810.1	Refseq
Affymetrix Human Clariom D Assay	PSR1300144693.hg.1	TC1300006555.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1300144693.hg.1	ENST00000611481.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144693.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144693.hg.1	ENST00000631321.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144693.hg.1	NR_103810.1	Refseq
Affymetrix Human Clariom D Assay	PSR1300144696.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144696.hg.1	ENST00000631321.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144696.hg.1	NR_103810.1	Refseq
Affymetrix Human Clariom D Assay	PSR1300144696.hg.1	TC1300006555.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1300144696.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144696.hg.1	ENST00000631321.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144696.hg.1	NR_103810.1	Refseq
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	ENST00000611481.1	Ensembl
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	ENST00000611481.1	Ensembl
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	ENST00000611481.1	Ensembl
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	ENST00000611481.1	Ensembl
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	ENST00000631321.1	Ensembl
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	ENST00000631321.1	Ensembl
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	ENST00000631321.1	Ensembl
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	ENST00000631321.1	Ensembl
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	ENST00000631321.1	Ensembl
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	NR_103810.1	Refseq
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	NR_103810.1	Refseq
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	NR_103810.1	Refseq
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	NR_103810.1	Refseq
Affymetrix Human Clariom D Assay	TC1300006555.hg.1	NR_103810.1	Refseq
Affymetrix Human Clariom D Assay	PSR1300144694.hg.1	ENST00000611481.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144694.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144694.hg.1	ENST00000631321.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144694.hg.1	NR_103810.1	Refseq
Affymetrix Human Clariom D Assay	PSR1300144694.hg.1	TC1300006555.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1300144694.hg.1	ENST00000611481.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144694.hg.1	ENST00000616974.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144694.hg.1	ENST00000631321.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300144694.hg.1	NR_103810.1	Refseq

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Catalog #	4426961
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Genomic Map