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          • Home
          • › Search Tool
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          • › Mm00515937_gH
          See other HDAC5 GE Assays ›
          Gene Symbol:
          Hdac5
          Gene Name:
          histone deacetylase 5
          Gene Aliases:
          AI426555, Hdac4, mHDA1, mKIAA0600
          Chromosome Location:
          Chr.11: 102195747 - 102230186 on Build GRCm38
          Species:
          Mouse
          Species Specific ID (Flybase ID):
          -
          Assay ID Mm00515937_gH
          Size
          Availability Made To Order
          Catalog # 4351372
          Price
          Your Price
          Online offer:
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Hdac5
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_001077696.1 NP_001071164.1 22 - 23 3167 60
          NM_001284248.1 NP_001271177.1 24 - 25 3679 60
          NM_001284249.1 NP_001271178.1 23 - 24 3276 60
          NM_001284250.1 NP_001271179.1 22 - 23 3164 60
          NM_010412.3 NP_034542.3 22 - 23 3164 60
          GenBank mRNA AF006602.2 - 21 - 22 2877 60
          AF207748.1 - 21 - 22 2796 60
          AK122325.2 - 17 - 18 2206 60
          AK139202.1 - 23 - 24 3250 60
          AK145972.1 - 22 - 23 3130 60
          AK146483.1 - 22 - 23 3103 60
          AK155335.1 - 22 - 23 3138 60
          AK161956.1 - 2 - 3 296 60
          BC023309.1 - 13 - 14 1717 60
          BC049926.1 - 22 - 23 3098 60
          BC058554.1 - 24 - 25 3631 60
          BC060609.1 - 21 - 22 2958 5720438 60

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          More Information


          Updated Mapping Information

          This assay targets the same location as MTA transcript cluster(s) TC1100003829.mm.1

          Set Membership:

          Ambion siRNA available Amplicon length less than or equal to 70 Mammalian Gene Collection Detect Genomic DNA Mus musculus Probe spans exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Hdac5

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription by RNA polymerase II
          osteoblast development
          chromatin organization
          transcription, DNA-templated
          regulation of transcription, DNA-templated
          transcription by RNA polymerase II
          protein deacetylation
          inflammatory response
          nervous system development
          heart development
          response to xenobiotic stimulus
          negative regulation of gene expression
          regulation of myotube differentiation
          negative regulation of myotube differentiation
          histone deacetylation
          B cell differentiation
          multicellular organismal response to stress
          regulation of gene expression, epigenetic
          B cell activation
          response to cocaine
          regulation of protein binding
          negative regulation of osteoblast differentiation
          negative regulation of striated muscle tissue development
          negative regulation of transcription, DNA-templated
          positive regulation of transcription by RNA polymerase II
          regulation of skeletal muscle fiber development
          positive regulation of DNA-binding transcription factor activity
          regulation of striated muscle cell differentiation
          renal tubule morphogenesis
          cellular response to fluid shear stress
          negative regulation of cell migration involved in sprouting angiogenesis
          positive regulation of neural precursor cell proliferation
          positive regulation of stem cell proliferation
          transcription cis-regulatory region binding
          RNA polymerase III general transcription initiation factor binding
          core promoter sequence-specific DNA binding
          chromatin binding
          transcription corepressor activity
          histone deacetylase activity
          protein kinase C binding
          protein binding
          transcription factor binding
          hydrolase activity
          protein kinase binding
          histone deacetylase activity (H3-K14 specific)
          NAD-dependent histone deacetylase activity (H3-K14 specific)
          histone deacetylase activity (H3-K9 specific)
          protein deacetylase activity
          histone deacetylase activity (H4-K16 specific)
          histone deacetylase binding
          metal ion binding
          NAD-dependent histone deacetylase activity (H3-K9 specific)
          NAD-dependent histone deacetylase activity (H4-K16 specific)
          NAD-dependent histone deacetylase activity (H3-K18 specific)
          DNA-binding transcription factor binding

          MicroArray Probes:

          Affymetrix

          Array Name Probe IDs Targets Target Type
          Affymetrix Mouse Clariom S Array PSR1100035521.mm.1 TC1100003829.mm.1 MTA TC
          Affymetrix Mouse Clariom S Array PSR1100035521.mm.1 NM_001077696.1.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035521.mm.1 NM_001077696.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035521.mm.1 NM_001284248.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035521.mm.1 NM_001284249.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035521.mm.1 NM_001284250.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035521.mm.1 NM_010412.3.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035521.mm.1 NM_010412.3 Refseq

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