Name: [Mm01233093_m1] [Six3os1]
Creator: Thermo Fisher Scientific
Keywords: [Six3os1] Assay, [SIX homeobox 3, opposite strand 1] Assay

Assay Details

Gene Symbol: Six3os1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_038082.1		2 - 3	495		110
	NR_038083.1		2 - 3	495		110
	NR_038085.1		2 - 3	495		110
	NR_038086.1		2 - 3	495		110
GenBank mRNA	AK053722.1	-	2 - 3	497		110
	CA527570.1	-	2 - 3	439		110
	CF737515.1	-	2 - 3	455		110
	CF737925.1	-	2 - 3	471		110

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	CV884137.1	-	2 - 3	526	Chr. 17 - 85613681 - 85617637 [-] on Build GRCm38	110
GenBankmRNA	BE332550.1	-	2 - 3		Chr. 17 - 85613784 - 85617436 [+] on Build GRCm38	110
GenBankmRNA	CF729478.1	-	2 - 3	457	Chr. 17 - 85613682 - 85618358 [-] on Build GRCm38	110

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	calmodulin-lysine N-methyltransferase	Camkmt	1700106N22Rik, AI480743, AV099781, CLNMT, CaM KMT	-156.1kb	Anti-sense	Chr. 17 - 85090592 - 85458589 on NCBI Build GRCm38
Downstream	sine oculis-related homeobox 3	Six3	E130112M24Rik, Six3a, Six3alpha, Six3b, Six3beta	5.1kb	Anti-sense	Chr. 17 - 85620834 - 85626191 on NCBI Build GRCm38

More Information

Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1700002661.mm.1

Set Membership:

Amplicon length greater than or equal to 101

3' Most

Mus musculus

Probe spans exons

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Agilent Affymetrix

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2145154	AY589791.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2145154	NR_015387.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2145164	AY589792.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2145164	BC065087.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2145164	NR_015385.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2145159	AK053722.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2145159	BC065087.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2145159	AY589790.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2145159	NR_015386.1	mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2	A_55_P2145159	AK021382.1	mouse_transcriptome
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	478682	-	-
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	857857	-	-
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	338134	-	-
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	688015	-	-
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	839866	-	-
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	290076	-	-
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	936114	-	-
Agilent SurePrint G3 Mouse CGH Microarray 1x1M	549874	-	-
Agilent SurePrint G3 Mouse CGH Microarray 4x180K	93746	-	-
Agilent Mouse Genome CGH Microarray 44K G4426B	A_53_P163177	-	-
Agilent Mouse Genome CGH Microarray 44K G4426B	A_53_P159532	-	-
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2145164	AY589792.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2145164	BC065087.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2145164	NR_015385.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2145154	AY589791.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2145154	NR_015387.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2145159	AK053722.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2145159	BC065087.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2145159	AY589790.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2145159	NR_015386.1	mouse_transcriptome
SurePrint G3 Mouse Gene Expression Microarray G4852A	A_55_P2145159	AK021382.1	mouse_transcriptome
Agilent Six_ChIP_03_of_03_v2	A_68_P31411605	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411620	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13541037	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411590	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411607	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411635	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411637	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13541004	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411600	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411655	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13260445	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411613	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411589	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411640	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411638	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13541054	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13302155	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13540996	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13521393	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13541015	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411623	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411630	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411634	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411666	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411664	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13480357	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13541000	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411588	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411645	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411622	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13302163	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13260446	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411592	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411653	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13302159	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411615	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411602	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13540993	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13063872	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411643	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411644	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411652	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13541001	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411631	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411668	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411676	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411675	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411604	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13541014	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13540995	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13541049	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411647	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13540999	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411606	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411636	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P31411597	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13260447	-	-
Agilent Six_ChIP_03_of_03_v2	A_68_P13511321	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Gene 1.0 ST Array	10453392	-	-
Affymetrix Mouse Gene 1.0 ST Array	10453391	-	-
Affymetrix Mouse Gene 1.0 ST Array	10453393	-	-
Affymetrix HT MG-430 PM Array Plate	1431168_PM_at	-	-
Affymetrix Mouse Gene 1.1 ST Array	10453390	-	-
Mouse Genome 430 2.0 Array	1431168_PM_at	-	-
Mouse Genome 430 2.0 Array	1431168_at	-	-
Affymetrix Mouse Clariom S Array	PSR1700024202.mm.1	TC1700002661.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1700024202.mm.1	NR_038082.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024202.mm.1	NR_038082.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024186.mm.1	TC1700002661.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1700024186.mm.1	NR_038085.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024186.mm.1	NR_038085.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024206.mm.1	TC1700002661.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1700024206.mm.1	NR_038082.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024206.mm.1	NR_038082.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024206.mm.1	NR_038083.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024206.mm.1	NR_038083.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024206.mm.1	NR_038084.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024206.mm.1	NR_038084.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024206.mm.1	NR_038085.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024206.mm.1	NR_038085.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024206.mm.1	NR_038086.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024206.mm.1	NR_038086.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024187.mm.1	TC1700002661.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1700024187.mm.1	NR_038085.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024187.mm.1	NR_038085.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024205.mm.1	TC1700002661.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1700024205.mm.1	NR_038082.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024205.mm.1	NR_038082.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024203.mm.1	TC1700002661.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR1700024203.mm.1	NR_038082.1.1	Refseq
Affymetrix Mouse Clariom S Array	PSR1700024203.mm.1	NR_038082.1	Refseq
Mouse Expression Set 430	1431168_at	-	-
Mouse Expression Set 430	1431168_PM_at	-	-
Affymetrix HT Mouse Genome 430B Array	1431168_at	-	-
Affymetrix HT Mouse Genome 430B Array	1431168_PM_at	-	-

Availability	Made To Order
Catalog #	4426961
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System Message

Genomic Map