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          • › Mm01246076_m1
          See other HDAC5 GE Assays ›
          Gene Symbol:
          Hdac5
          Gene Name:
          histone deacetylase 5
          Gene Aliases:
          AI426555, Hdac4, mHDA1, mKIAA0600
          Chromosome Location:
          Chr.11: 102195747 - 102230186 on Build GRCm38
          Species:
          Mouse
          Species Specific ID (Flybase ID):
          -
          Assay ID Mm01246076_m1
          Best Coverage
          Size
          Availability Inventoried
          Catalog # 4331182
          Price
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Hdac5
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_001077696.1 NP_001071164.1 20 - 21 2949 81
          NM_001284248.1 NP_001271177.1 22 - 23 3461 81
          NM_001284249.1 NP_001271178.1 21 - 22 3058 81
          NM_001284250.1 NP_001271179.1 20 - 21 2946 81
          NM_010412.3 NP_034542.3 20 - 21 2946 81
          GenBank mRNA AF006602.2 - 19 - 20 2659 81
          AF207748.1 - 19 - 20 2578 81
          AK122325.2 - 15 - 16 1988 81
          AK139202.1 - 21 - 22 3032 81
          AK145972.1 - 20 - 21 2912 81
          AK146483.1 - 20 - 21 2885 81
          AK155335.1 - 20 - 21 2920 81
          AK156008.1 - 14 - 15 3783 81
          AK157159.1 - 14 - 15 3783 81
          BC023309.1 - 11 - 12 1499 81
          BC049926.1 - 20 - 21 2880 81
          BC058554.1 - 22 - 23 3413 81
          BC060609.1 - 19 - 20 2740 5720438 81

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          More Information


          Updated Mapping Information

          This assay targets the same location as MTA transcript cluster(s) TC1100003829.mm.1

          Set Membership:

          Ambion siRNA available Amplicon length between 71 and 85 Mammalian Gene Collection Recommended Assay Mus musculus Inventoried Probe spans exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Hdac5

          Panther Classification:

          Molecular Function -

          histone modifying enzyme

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription from RNA polymerase II promoter
          osteoblast development
          transcription, DNA-templated
          regulation of transcription, DNA-templated
          transcription from RNA polymerase II promoter
          protein deacetylation
          inflammatory response
          nervous system development
          heart development
          negative regulation of gene expression
          regulation of myotube differentiation
          negative regulation of myotube differentiation
          chromatin modification
          histone deacetylation
          B cell differentiation
          multicellular organismal response to stress
          regulation of gene expression, epigenetic
          B cell activation
          response to cocaine
          response to drug
          regulation of protein binding
          negative regulation of osteoblast differentiation
          negative regulation of striated muscle tissue development
          negative regulation of transcription, DNA-templated
          positive regulation of transcription from RNA polymerase II promoter
          regulation of skeletal muscle fiber development
          positive regulation of sequence-specific DNA binding transcription factor activity
          regulation of striated muscle cell differentiation
          renal tubule morphogenesis
          cellular response to fluid shear stress
          negative regulation of cell migration involved in sprouting angiogenesis
          positive regulation of neural precursor cell proliferation
          positive regulation of stem cell proliferation
          RNA polymerase III transcription factor binding
          core promoter sequence-specific DNA binding
          core promoter binding
          transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
          RNA polymerase II transcription factor binding
          chromatin binding
          transcription corepressor activity
          histone deacetylase activity
          protein kinase C binding
          protein binding
          transcription factor binding
          hydrolase activity
          protein kinase binding
          histone deacetylase activity (H3-K14 specific)
          NAD-dependent histone deacetylase activity (H3-K14 specific)
          histone deacetylase activity (H3-K9 specific)
          protein deacetylase activity
          histone deacetylase activity (H4-K16 specific)
          histone deacetylase binding
          transcription regulatory region DNA binding
          metal ion binding
          NAD-dependent histone deacetylase activity (H3-K9 specific)
          NAD-dependent histone deacetylase activity (H4-K16 specific)
          repressing transcription factor binding
          NAD-dependent histone deacetylase activity (H3-K18 specific)

          MicroArray Probes:

          Affymetrix

          Array Name Probe IDs Targets Target Type
          Affymetrix Mouse Clariom S Array PSR1100035529.mm.1 NM_001077696.1.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035529.mm.1 NM_001077696.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035529.mm.1 NM_001284248.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035529.mm.1 NM_001284249.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035529.mm.1 NM_001284250.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035529.mm.1 NM_010412.3.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035529.mm.1 NM_010412.3 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035529.mm.1 TC1100003829.mm.1 MTA TC
          Affymetrix Mouse Clariom S Array PSR1100035525.mm.1 NM_001077696.1.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035525.mm.1 NM_001077696.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035525.mm.1 NM_001284248.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035525.mm.1 NM_001284249.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035525.mm.1 NM_001284250.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035525.mm.1 NM_010412.3.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035525.mm.1 NM_010412.3 Refseq
          Affymetrix Mouse Clariom S Array PSR1100035525.mm.1 TC1100003829.mm.1 MTA TC

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