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          • › Mm01281943_s1
          See other SOX11 GE Assays ›
          Gene Symbol:
          Sox11
          Gene Name:
          SRY (sex determining region Y)-box 11
          Gene Aliases:
          1110038H03Rik, 6230403H02Rik, AI836553, end1
          Chromosome Location:
          Chr.12: 27334268 - 27342718 on Build GRCm38
          Species:
          Mouse
          Species Specific ID (Flybase ID):
          -
          Assay ID Mm01281943_s1
          Best Coverage
          Size
          Availability Inventoried
          Catalog # 4331182
          Price
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Sox11
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_009234.6 NP_033260.4 1 1594 102
          GenBank mRNA AK146514.1 - 1 1554 102
          AK165005.1 - 1 1594 102
          AK165693.1 - 1 1589 102
          BC053503.1 - 1 1450 102
          BC062095.1 - 1 1397 5716171 102
          BC078643.1 - 1 1579 30144974 102

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          More Information


          Updated Mapping Information

          This assay targets the same location as MTA transcript cluster(s) TC1200001562.mm.1

          Set Membership:

          Ambion siRNA available Amplicon length greater than or equal to 101 Mammalian Gene Collection Detect Genomic DNA Recommended Assay Mus musculus 1700 Inventoried Both primers and probe map within a single exon

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Sox11

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription by RNA polymerase II
          skeletal system development
          neural tube formation
          lens morphogenesis in camera-type eye
          outflow tract morphogenesis
          cardiac ventricle formation
          noradrenergic neuron differentiation
          transcription, DNA-templated
          regulation of transcription, DNA-templated
          transcription by RNA polymerase II
          translation
          multicellular organism development
          nervous system development
          positive regulation of cell population proliferation
          positive regulation of gene expression
          negative regulation of gene expression
          glial cell proliferation
          neural crest cell development
          spinal cord development
          glial cell development
          cell differentiation
          positive regulation of BMP signaling pathway
          positive regulation of hippo signaling
          skeletal muscle cell differentiation
          positive regulation of neuron differentiation
          positive regulation of osteoblast differentiation
          positive regulation of ossification
          positive regulation of transcription, DNA-templated
          positive regulation of transcription by RNA polymerase II
          positive regulation of hormone secretion
          sympathetic nervous system development
          embryonic digestive tract morphogenesis
          embryonic skeletal system morphogenesis
          negative regulation of lymphocyte proliferation
          positive regulation of neurogenesis
          hard palate development
          soft palate development
          limb bud formation
          negative regulation of glial cell proliferation
          ventricular septum morphogenesis
          lung morphogenesis
          negative regulation of cell death
          neuroepithelial cell differentiation
          eyelid development in camera-type eye
          somite development
          cornea development in camera-type eye
          closure of optic fissure
          positive regulation of stem cell proliferation
          negative regulation of transcription regulatory region DNA binding
          positive regulation of lens epithelial cell proliferation
          transcription cis-regulatory region binding
          RNA polymerase II core promoter sequence-specific DNA binding
          DNA-binding transcription factor activity, RNA polymerase II-specific
          DNA binding
          DNA-binding transcription factor activity
          transcription coactivator activity
          translation factor activity, RNA binding

          MicroArray Probes:

          Affymetrix ABI

          Array Name Probe IDs Targets Target Type
          Affymetrix Mouse Clariom S Array PSR1200010812.mm.1 TC1200001562.mm.1 MTA TC
          Affymetrix Mouse Clariom S Array PSR1200010812.mm.1 NM_009234.6.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1200010812.mm.1 NM_009234.6 Refseq
          Affymetrix Mouse Clariom S Array PSR1200010816.mm.1 TC1200001562.mm.1 MTA TC
          Affymetrix Mouse Clariom S Array PSR1200010816.mm.1 NM_009234.6.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1200010816.mm.1 NM_009234.6 Refseq
          Affymetrix Mouse Clariom S Array PSR1200010817.mm.1 TC1200001562.mm.1 MTA TC
          Affymetrix Mouse Clariom S Array PSR1200010817.mm.1 NM_009234.6.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1200010817.mm.1 NM_009234.6 Refseq
          Affymetrix Mouse Clariom S Array PSR1200010813.mm.1 TC1200001562.mm.1 MTA TC
          Affymetrix Mouse Clariom S Array PSR1200010813.mm.1 NM_009234.6.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1200010813.mm.1 NM_009234.6 Refseq
          Affymetrix Mouse Clariom S Array PSR1200010814.mm.1 TC1200001562.mm.1 MTA TC
          Affymetrix Mouse Clariom S Array PSR1200010814.mm.1 NM_009234.6.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1200010814.mm.1 NM_009234.6 Refseq
          Affymetrix Mouse Clariom S Array PSR1200010818.mm.1 TC1200001562.mm.1 MTA TC
          Affymetrix Mouse Clariom S Array PSR1200010818.mm.1 NM_009234.6.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1200010818.mm.1 NM_009234.6 Refseq
          Affymetrix Mouse Clariom S Array PSR1200010811.mm.1 TC1200001562.mm.1 MTA TC
          Affymetrix Mouse Clariom S Array PSR1200010811.mm.1 NM_009234.6.1 Refseq
          Affymetrix Mouse Clariom S Array PSR1200010811.mm.1 NM_009234.6 Refseq
          Array Name Probe IDs Targets Target Type
          ABI Mouse Genome Survey Microarray 604810 - -

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          Host server : magellan-search-784b477dbd-pq4vn:80/100.66.130.62:80.
          git-commit: d41a97e986437cfbf980934f14197a4b4d3eb741
          git-url: https://github.com/thermofisher/magellan-search
          git-branch: release/2.31.0-2025.06.23-1.0