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          • Home
          • › Search Tool
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          • › Mm03943748_s1
          See other KDM5C GE Assays ›
          Gene Symbol:
          Kdm5c
          Gene Name:
          lysine (K)-specific demethylase 5C
          Gene Aliases:
          D930009K15Rik, Jarid1c, Smcx, mKIAA0234
          Chromosome Location:
          Chr.X: 152233196 - 152279102 on Build GRCm38
          Species:
          Mouse
          Species Specific ID (Flybase ID):
          -
          Assay ID Mm03943748_s1
          Size
          Availability Made To Order
          Catalog # 4426961
          Price
          Your Price
          Online offer:
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Kdm5c
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_013668.4 NP_038696.2 26 10576 94
          GenBank mRNA AK052994.1 - 1 1244 94
          AK148627.1 - 1 2236 94
          BG075333.2 - 1 94
          BQ177188.1 - 1 94
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
          GenBankmRNA BM932394.1 - 1 Chr. X - 152278332 - 152278936 [-] on Build GRCm38 94
          GenBankmRNA BY407362.1 - 1 53 Chr. X - 152278608 - 152278939 [+] on Build GRCm38 94
          GenBankmRNA AW240860.1 - 1 Chr. X - 152278514 - 152278932 [-] on Build GRCm38 94
          GenBankmRNA C88261.1 - Chr. - - [-] on Build 94
          GenBankmRNA AW549557.2 - 1 Chr. X - 152278471 - 152278932 [-] on Build GRCm38 94
          GenBankmRNA BB522751.2 - 1 372 Chr. X - 152278288 - 152278921 [+] on Build GRCm38 94
          GenBankmRNA AW122702.1 - 1 Chr. X - 152278460 - 152278940 [-] on Build GRCm38 94
          GenBankmRNA AW555812.1 - 1 Chr. X - 152278237 - 152278932 [-] on Build GRCm38 94
          GenBankmRNA BE648268.1 - 1 586 Chr. X - 152278077 - 152278799 [+] on Build GRCm38 94
          GenBankmRNA BB667285.1 - 1 188 Chr. X - 152278475 - 152279097 [+] on Build GRCm38 94

          Adjacent Gene Details

          Gene name Gene Symbol Alias Distance Relative Direction Location Chromsome
          Upstream IQ motif and Sec7 domain 2 Iqsec2 Brag1,
          mKIAA0522
          -52.2kb Sense Chr. X - 152144183 - 152225237 on NCBI Build GRCm38
          Downstream Kdm5c adjacent non-coding transcript Kantr 2810454L23Rik,
          2900056M20Rik,
          Spasm
          15.9kb Anti-sense Chr. X - 152294824 - 152327493 on NCBI Build GRCm38

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          More Information


          Additional Information:

          Based on assay re-evaluation, this assay may detect genomic DNA. Please contact Tech Support if you need more information.

          Set Membership:

          Ambion siRNA available Amplicon length between 86 and 100 3' Most Detect Genomic DNA Mus musculus Both primers and probe map within a single exon

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Kdm5c

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription by RNA polymerase II
          chromatin organization
          transcription, DNA-templated
          regulation of transcription, DNA-templated
          histone H3-K4 demethylation
          regulation of circadian rhythm
          negative regulation of transcription, DNA-templated
          rhythmic process
          sulfonate dioxygenase activity
          DNA binding
          zinc ion binding
          oxidoreductase activity
          2-oxoglutarate-dependent dioxygenase activity
          2,4-dichlorophenoxyacetate alpha-ketoglutarate dioxygenase activity
          procollagen-proline dioxygenase activity
          histone H3-methyl-lysine-4 demethylase activity
          hypophosphite dioxygenase activity
          identical protein binding
          DNA-N1-methyladenine dioxygenase activity
          metal ion binding
          dioxygenase activity
          C-19 gibberellin 2-beta-dioxygenase activity
          C-20 gibberellin 2-beta-dioxygenase activity

          MicroArray Probes:

          Agilent Affymetrix

          Array Name Probe IDs Targets Target Type
          Agilent SurePrint G3 Mouse CGH Microarray 1x1M 360597 - -
          Agilent SurePrint G3 Mouse CGH Microarray 1x1M 227553 - -
          Agilent Mouse Genome CGH Microarray 44K G4426B A_53_P162423 - -
          Agilent Mouse Genome CGH Microarray 244A (G4415A) A_53_P162423 - -
          Agilent Mouse Genome CGH Microarray 105A (G4416A) A_53_P162423 - -
          Array Name Probe IDs Targets Target Type
          Affymetrix HT MG-430 PM Array Plate 1435348_PM_at - -
          Mouse Genome 430 2.0 Array 1435348_PM_at - -
          Mouse Genome 430 2.0 Array 1435348_at - -
          Mouse Expression Set 430 1435348_PM_at - -
          Mouse Expression Set 430 1435348_at - -
          Affymetrix HT Mouse Genome 430B Array 1435348_at - -
          Affymetrix HT Mouse Genome 430B Array 1435348_PM_at - -

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