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Gene Symbol:
Malat1
Gene Name:
Gene Aliases:
Species:
Mouse
Species Specific ID (Flybase ID):
Assay ID Mm03958568_s1
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Catalog # 4426961
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Assay Details

Gene Symbol: Malat1
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NR_002847.2 1 3880 124
GenBank mRNA AK020483.1 - 1 644 124
EF177380.1 - 1 3880 124
FJ209304.1 - 1 3880 124
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA CK022553.1 - 1 580 Chr. 19 - 5798584 - 5799370 [-] on Build GRCm38 125
GenBankmRNA BE860006.1 - 1 Chr. 19 - 5798543 - 5799036 [+] on Build GRCm38 124
GenBankmRNA CB571522.1 - 1 464 Chr. 19 - 5798622 - 5799255 [-] on Build GRCm38 124
GenBankmRNA AA866682.1 - 1 261 Chr. 19 - 5798658 - 5799053 [-] on Build GRCm38 123
GenBankmRNA AV473928.1 - 1 329 Chr. 19 - 5798629 - 5799122 [-] on Build GRCm38 124
GenBankmRNA CJ294852.1 - 1 57 Chr. 19 - 5798343 - 5798848 [-] on Build GRCm38 124
GenBankmRNA BE947870.1 - 1 153 Chr. 19 - 5798554 - 5798944 [-] on Build GRCm38 124
GenBankmRNA BM729404.1 - 1 Chr. 19 - 5798398 - 5798913 [+] on Build GRCm38 124
GenBankmRNA BQ101337.1 - 1 Chr. 19 - 5798398 - 5798987 [+] on Build GRCm38 124
GenBankmRNA BE690967.1 - 1 Chr. 19 - 5798394 - 5798872 [+] on Build GRCm38 124
GenBankmRNA DV066173.1 - 1 449 Chr. 19 - 5798414 - 5799206 [-] on Build GRCm38 124
GenBankmRNA AA203775.1 - 1 229 Chr. 19 - 5798681 - 5799020 [-] on Build GRCm38 124
GenBankmRNA BQ956096.1 - 1 246 Chr. 19 - 5798194 - 5799037 [-] on Build GRCm38 124
GenBankmRNA AA245502.1 - 1 Chr. 19 - 5798319 - 5798843 [+] on Build GRCm38 124
GenBankmRNA AI647074.1 - 1 Chr. 19 - 5798394 - 5798933 [+] on Build GRCm38 124
GenBankmRNA BU503206.1 - 1 532 Chr. 19 - 5798479 - 5799323 [-] on Build GRCm38 124
GenBankmRNA AY722410.1 - 1 3880 Chr. - - [-] on Build 124
GenBankmRNA AA107815.1 - 1 214 Chr. 19 - 5798446 - 5799006 [-] on Build GRCm38 124
GenBankmRNA BF472335.1 - 1 Chr. 19 - 5798592 - 5798937 [+] on Build GRCm38 124
GenBankmRNA DV066757.1 - 167 Chr. - - [-] on Build 124
GenBankmRNA BG276929.1 - 1 Chr. 19 - 5798382 - 5798891 [+] on Build GRCm38 124
GenBankmRNA BU514905.1 - 400 Chr. - - [-] on Build 124
GenBankmRNA BI991162.1 - 1 398 Chr. 19 - 5798590 - 5799189 [-] on Build GRCm38 124

Adjacent Gene Details

Gene name Gene Symbol Alias Distance Relative Direction Location Chromsome
Upstream SCY1-like 1 (S. cerevisiae) Scyl1 2810011O19Rik,
C85140,
Ntkl,
mdf,
mfd,
p105 		-27.0kb Sense Chr. 19 - 5758427 - 5771414 on NCBI Build GRCm38
Downstream nuclear paraspeckle assembly transcript 1 (non-protein coding) Neat1 2310043N10Rik,
VINC 		42.9kb Sense Chr. 19 - 5842302 - 5845478 on NCBI Build GRCm38

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More Information


Additional Information:

Based on assay re-evaluation, this assay may detect genomic DNA. Please contact Tech Support if you need more information.

Set Membership:

 Amplicon length greater than or equal to 101 Detect Genomic DNA Mus musculus Both primers and probe map within a single exon

Gene Ontology Categories:

Function(s) Process(es)


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