Name: [Mm04411625_m1] [Halr1]
Creator: Thermo Fisher Scientific
Keywords: [Halr1] Assay, [Hoxa adjacent long noncoding RNA 1] Assay

See other HALR1 GE Assays ›

Gene Symbol:: Halr1
Gene Name:: Hoxa adjacent long noncoding RNA 1
Gene Aliases:: Gm15055, Haunt, Linchoxa1, OTTMUSG00000018881, linc-Evx1, linc-Hoxa1, linc1547
Chromosome Location:: Chr.6: 52102949 - 52113684 on Build GRCm38
Species:: Mouse
Species Specific ID (Flybase ID):: -

Assay ID

Mm04411625_m1

Size

Assay Details

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	src family associated phosphoprotein 2	Skap2	2610021A10Rik, AA960083, BB137539, RA70, SKAP-HOM, Saps, Scap2, mSKAP55R	-90.4kb	Anti-sense	Chr. 6 - 51859165 - 52012549 on NCBI Build GRCm38
Downstream	homeobox A1	Hoxa1	ERA1, Hox-1.6	48.5kb	Anti-sense	Chr. 6 - 52155367 - 52160410 on NCBI Build GRCm38

This assay targets the same location as MTA transcript cluster(s) TC0600000615.mm.1

Amplicon length between 71 and 85

Mus musculus

Probe spans exons

Function(s) Process(es)

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Mouse Clariom S Array	PSR0600004690.mm.1	TC0600000615.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0600004690.mm.1	NR_110440.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600004691.mm.1	TC0600000615.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0600004691.mm.1	NR_110440.1	Refseq
Affymetrix Mouse Clariom S Array	PSR0600004693.mm.1	TC0600000615.mm.1	MTA TC
Affymetrix Mouse Clariom S Array	PSR0600004693.mm.1	NR_110440.1	Refseq