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          • Home
          • › Search Tool
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          • › Rn00562483_g1
          See other APOA1 GE Assays ›
          Gene Symbol:
          Apoa1
          Gene Name:
          apolipoprotein A-I
          Gene Aliases:
          apoA-I
          Chromosome Location:
          Chr.8: 50525091 - 50526875 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn00562483_g1
          Size
          Availability Inventoried
          Catalog # 4331182
          Price
          Your Price
          Online offer:
          Check your price ›
          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Apoa1
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_012738.1 NP_036870.1 2 - 3 81 73
          GenBank mRNA BC089820.1 - 1 - 2 65 73
          FQ209434.1 - 2 - 3 82 73
          FQ209676.1 - 2 - 3 86 73
          FQ209742.1 - 2 - 3 86 73
          FQ209761.1 - 2 - 3 82 73
          FQ209776.1 - 2 - 3 86 73
          FQ209818.1 - 2 - 3 87 73
          FQ209900.1 - 2 - 3 82 73
          FQ209928.1 - 2 - 3 86 73
          FQ209958.1 - 2 - 3 86 73
          FQ210010.1 - 2 - 3 86 73
          FQ210126.1 - 2 - 3 83 73
          FQ210161.1 - 2 - 3 109 73
          FQ210354.1 - 2 - 3 86 73
          FQ210367.1 - 2 - 3 82 73
          FQ210371.1 - 2 - 3 82 73
          FQ210443.1 - 2 - 3 83 73
          FQ210470.1 - 2 - 3 82 73
          FQ210544.1 - 2 - 3 84 73
          FQ210653.1 - 2 - 3 84 73
          FQ210722.1 - 2 - 3 86 73
          FQ210743.1 - 2 - 3 189 73
          FQ210863.1 - 2 - 3 86 73
          FQ210880.1 - 2 - 3 82 73
          FQ210914.1 - 2 - 3 82 73
          FQ211297.1 - 2 - 3 84 73
          FQ211535.1 - 2 - 3 89 73
          FQ211571.1 - 2 - 3 82 73
          FQ218078.1 - 2 - 3 82 73
          FQ218079.1 - 2 - 3 86 73
          FQ218325.1 - 2 - 3 86 73
          FQ218519.1 - 2 - 3 82 73
          FQ218525.1 - 2 - 3 82 73
          FQ218615.1 - 2 - 3 81 73
          FQ218659.1 - 2 - 3 72
          FQ218663.1 - 2 - 3 82 73
          FQ218837.1 - 2 - 3 88 73
          FQ219021.1 - 2 - 3 86 73
          FQ219052.1 - 2 - 3 88 73
          FQ219074.1 - 2 - 3 82 73
          FQ219577.1 - 2 - 3 82 73
          FQ219728.1 - 2 - 3 82 73
          FQ224655.1 - 2 - 3 82 73
          FQ229884.1 - 2 - 3 121 73
          M00001.1 - 2 - 3 81 73

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC0800000620.rn.1

          Additional Information:

          This assay is in the 5'UTR region of the BC089820.1, M00001.1, NM_012738.1 transcripts.

          Set Membership:

          Ambion siRNA available Amplicon length between 71 and 85 3' Most Mammalian Gene Collection Detect Genomic DNA Rattus norvegicus 1700 Inventoried Probe spans exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Apoa1

          Gene Ontology Categories:

          Function(s) Process(es)

          regulation of protein phosphorylation
          endothelial cell proliferation
          phospholipid metabolic process
          phosphatidylcholine biosynthetic process
          cholesterol biosynthetic process
          transforming growth factor beta receptor signaling pathway
          G protein-coupled receptor signaling pathway
          integrin-mediated signaling pathway
          response to nutrient
          protein localization
          cholesterol metabolic process
          glucocorticoid metabolic process
          response to xenobiotic stimulus
          negative regulation of tumor necrosis factor-mediated signaling pathway
          positive regulation of cholesterol esterification
          positive regulation of triglyceride catabolic process
          negative regulation of very-low-density lipoprotein particle remodeling
          peripheral nervous system axon regeneration
          phospholipid transport
          protein oxidation
          peptidyl-methionine modification
          lipid storage
          regulation of intestinal cholesterol absorption
          cholesterol transport
          adrenal gland development
          animal organ regeneration
          axon regeneration
          regulation of Cdc42 protein signal transduction
          cholesterol efflux
          phospholipid efflux
          negative regulation of heterotypic cell-cell adhesion
          very-low-density lipoprotein particle remodeling
          high-density lipoprotein particle assembly
          positive regulation of Rho protein signal transduction
          lipoprotein metabolic process
          lipoprotein biosynthetic process
          cholesterol homeostasis
          blood vessel endothelial cell migration
          response to estrogen
          reverse cholesterol transport
          positive regulation of fatty acid biosynthetic process
          phosphatidylcholine metabolic process
          negative regulation of inflammatory response
          protein stabilization
          negative chemotaxis
          positive regulation of lipoprotein lipase activity
          vitamin transport
          positive regulation of hydrolase activity
          negative regulation of hydrolase activity
          positive regulation of transferase activity
          positive regulation of stress fiber assembly
          phospholipid homeostasis
          negative regulation of lipase activity
          negative regulation of cell adhesion molecule production
          negative regulation of response to cytokine stimulus
          triglyceride homeostasis
          ERK1 and ERK2 cascade
          cholesterol import
          positive regulation of substrate adhesion-dependent cell spreading
          amyloid-beta binding
          lipid transporter activity
          phospholipid binding
          phospholipid transporter activity
          high-density lipoprotein particle binding
          lipid binding
          cholesterol binding
          enzyme binding
          phosphatidylcholine binding
          apolipoprotein receptor binding
          apolipoprotein A-I receptor binding
          identical protein binding
          chemorepellent activity
          lipase inhibitor activity
          phosphatidylcholine-sterol O-acyltransferase activator activity
          high-density lipoprotein particle receptor binding
          lipoprotein particle binding
          cholesterol transfer activity

          MicroArray Probes:

          Agilent Affymetrix ABI

          Array Name Probe IDs Targets Target Type
          Agilent Whole Rat Genome Microarray 4x44K v2 A_44_P411097 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P411097 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P411097 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_44_P411097 - -
          SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P411097 - -
          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Gene 1.0 ST Array 10940638 - -
          Affymetrix Rat Gene 1.1 ST Array 10940638 - -
          Rat Genome 230 2.0 Array 1368335_at - -
          Rat Genome 230 2.0 Array 1368335_PM_at - -
          Affymetrix HT Rat Focus Array 1368335_PM_at - -
          Affymetrix HT Rat Focus Array 1368335_at - -
          Affymetrix Rat Clariom S Assay PSR0800004021.rn.1 TC0800000620.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0800004020.rn.1 TC0800000620.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0800004019.rn.1 TC0800000620.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0800004018.rn.1 TC0800000620.rn.1 RTA TC
          Rat Expression Set 230 1368335_PM_at - -
          Rat Expression Set 230 1368335_at - -
          Affymetrix Rat Gene 1.0 ST Array 10940638 - -
          Rat Genome U34 Set J02597cds_s_at - -
          Rat Genome U34 Set M00001_i_at - -
          Array Name Probe IDs Targets Target Type
          ABI Rat Genome Survey Microarray 21670711 - -

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