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- Gene Symbol:
-
Scn5a - Gene Name:
- sodium channel, voltage-gated, type V, alpha subunit
- Gene Aliases:
- Nav1.5, SCAL
- Chromosome Location:
- Chr.8: 128169191 - 128266639 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Scn5a | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_001160162.1 | NP_001153634.1 | 21 - 22 | 4005 | 54 | |
| NM_013125.2 | NP_037257.1 | 22 - 23 | 4164 | 54 | ||
| XM_006244076.2 | XP_006244138.1 | 22 - 23 | 4334 | 54 | ||
| XM_008766670.1 | XP_008764892.1 | 22 - 23 | 5362 | 54 | ||
| XM_008766671.1 | XP_008764893.1 | 21 - 22 | 5203 | 54 | ||
| GenBank mRNA | AF353637.1 | - | 20 - 21 | 3808 | 54 | |
| M27902.1 | - | 22 - 23 | 4164 | 54 | ||
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC0800003548.rn.1Set Membership: |
Ambion siRNA available
Amplicon length less than or equal to 70
Ion Channel
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
regulation of heart rate
cardiac ventricle development
brainstem development
sodium ion transport
positive regulation of heart rate
positive regulation of sodium ion transport
response to organic cyclic compound
response to denervation involved in regulation of muscle adaptation
neuronal action potential
telencephalon development
cerebellum development
regulation of ion transmembrane transport
sodium ion transmembrane transport
odontogenesis of dentin-containing tooth
positive regulation of action potential
positive regulation of epithelial cell proliferation
membrane depolarization
cardiac muscle contraction
regulation of ventricular cardiac muscle cell membrane repolarization
regulation of atrial cardiac muscle cell membrane depolarization
regulation of atrial cardiac muscle cell membrane repolarization
regulation of ventricular cardiac muscle cell membrane depolarization
cellular response to calcium ion
cardiac muscle cell action potential involved in contraction
regulation of cardiac muscle cell contraction
ventricular cardiac muscle cell action potential
membrane depolarization during action potential
membrane depolarization during cardiac muscle cell action potential
SA node cell action potential
membrane depolarization during AV node cell action potential
membrane depolarization during SA node cell action potential
membrane depolarization during Purkinje myocyte cell action potential
membrane depolarization during bundle of His cell action potential
AV node cell to bundle of His cell communication
bundle of His cell to Purkinje myocyte communication
SA node cell to atrial cardiac muscle cell communication
regulation of heart rate by cardiac conduction
regulation of sodium ion transmembrane transport
voltage-gated sodium channel activity
protein binding
calmodulin binding
fibroblast growth factor binding
enzyme binding
protein kinase binding
ankyrin binding
ubiquitin protein ligase binding
ion channel binding
nitric-oxide synthase binding
voltage-gated sodium channel activity involved in cardiac muscle cell action potential
voltage-gated sodium channel activity involved in AV node cell action potential
voltage-gated sodium channel activity involved in bundle of His cell action potential
voltage-gated sodium channel activity involved in Purkinje myocyte action potential
voltage-gated sodium channel activity involved in SA node cell action potential
scaffold protein binding
regulation of heart rate
cardiac ventricle development
brainstem development
sodium ion transport
positive regulation of heart rate
positive regulation of sodium ion transport
response to organic cyclic compound
response to denervation involved in regulation of muscle adaptation
neuronal action potential
telencephalon development
cerebellum development
regulation of ion transmembrane transport
sodium ion transmembrane transport
odontogenesis of dentin-containing tooth
positive regulation of action potential
positive regulation of epithelial cell proliferation
membrane depolarization
cardiac muscle contraction
regulation of ventricular cardiac muscle cell membrane repolarization
regulation of atrial cardiac muscle cell membrane depolarization
regulation of atrial cardiac muscle cell membrane repolarization
regulation of ventricular cardiac muscle cell membrane depolarization
cellular response to calcium ion
cardiac muscle cell action potential involved in contraction
regulation of cardiac muscle cell contraction
ventricular cardiac muscle cell action potential
membrane depolarization during action potential
membrane depolarization during cardiac muscle cell action potential
SA node cell action potential
membrane depolarization during AV node cell action potential
membrane depolarization during SA node cell action potential
membrane depolarization during Purkinje myocyte cell action potential
membrane depolarization during bundle of His cell action potential
AV node cell to bundle of His cell communication
bundle of His cell to Purkinje myocyte communication
SA node cell to atrial cardiac muscle cell communication
regulation of heart rate by cardiac conduction
regulation of sodium ion transmembrane transport
voltage-gated sodium channel activity
protein binding
calmodulin binding
fibroblast growth factor binding
enzyme binding
protein kinase binding
ankyrin binding
ubiquitin protein ligase binding
ion channel binding
nitric-oxide synthase binding
voltage-gated sodium channel activity involved in cardiac muscle cell action potential
voltage-gated sodium channel activity involved in AV node cell action potential
voltage-gated sodium channel activity involved in bundle of His cell action potential
voltage-gated sodium channel activity involved in Purkinje myocyte action potential
voltage-gated sodium channel activity involved in SA node cell action potential
scaffold protein binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P063174 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_44_P823749 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 238254 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 769119 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 427010 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 751021 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 725823 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 214719 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 729887 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 447784 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 56802 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 446926 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 417831 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 411083 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 499713 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 681073 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 85095 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 166900 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 200096 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 879414 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 67116 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 532610 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 106483 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 135457 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 71770 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 611901 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 715690 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 360459 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 636610 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 289261 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 947008 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 193350 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 4809 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 256810 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 565220 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 730812 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 132459 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 147000 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 367564 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 622790 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 955150 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 513500 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 883535 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 756116 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 463797 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 300553 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 214627 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 762989 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 629756 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 445740 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 471496 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 90778 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 653839 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 575343 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 954603 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 455644 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 491859 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 935581 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 559360 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 280580 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 452462 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 607901 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 695981 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 127324 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 328933 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 923710 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 438867 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 56630 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 499208 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 58852 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 32654 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 7125 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 3135 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 79325 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 80538 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 21962 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 120615 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 107900 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 110289 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 137713 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P063174 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P823749 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P823749 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P063174 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_44_P823749 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P063174 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_43_P11727 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 58195 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 5769 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 34545 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 9429 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 24169 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 37225 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 76812 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10920895 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920884 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920898 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920899 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920878 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920869 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920875 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920889 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920888 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920873 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920874 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920877 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920885 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920891 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920890 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920883 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920880 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920872 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920881 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920892 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920870 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920894 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920879 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920882 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920897 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920896 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920876 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920871 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920886 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10920868 | - | - |
| Rat Genome 230 2.0 Array | 1377378_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1387536_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1388035_PM_a_at | - | - |
| Rat Genome 230 2.0 Array | 1387536_at | - | - |
| Rat Genome 230 2.0 Array | 1388035_a_at | - | - |
| Rat Genome 230 2.0 Array | 1377378_at | - | - |
| Affymetrix HT Rat Focus Array | 1387536_at | - | - |
| Affymetrix HT Rat Focus Array | 1387536_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1388035_PM_a_at | - | - |
| Affymetrix HT Rat Focus Array | 1388035_a_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR0800028861.rn.1 | TC0800003548.rn.1 | RTA TC |
| Rat Expression Set 230 | 1388035_a_at | - | - |
| Rat Expression Set 230 | 1377378_PM_at | - | - |
| Rat Expression Set 230 | 1387536_at | - | - |
| Rat Expression Set 230 | 1388035_PM_a_at | - | - |
| Rat Expression Set 230 | 1377378_at | - | - |
| Rat Expression Set 230 | 1387536_PM_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10920868 | - | - |
| Rat Genome U34 Set | M27902_at | - | - |
| Rat Genome U34 Set | M27902_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 22358974 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1359371 | - | - |
| RatRef-12 Expression BeadChip | ILMN_69726 | - | - |
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