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- Gene Symbol:
-
Cdh1 - Gene Name:
- cadherin 1
- Gene Aliases:
- -
- Chromosome Location:
- Chr.19: 38768467 - 38838395 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Cdh1 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_031334.1 | NP_112624.1 | 3 - 4 | 526 | 105 | |
| GenBank mRNA | AB017696.1 | - | 3 - 4 | 526 | 105 | |
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC1900000526.rn.1Set Membership: |
Ambion siRNA available
Amplicon length greater than or equal to 101
Recommended Assay
Rattus norvegicus
Rat Wnt Panel
Rat Tumor Metastasis Panel
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
in utero embryonic development
trophectodermal cell differentiation
epithelial cell morphogenesis
homophilic cell adhesion via plasma membrane adhesion molecules
synapse assembly
sensory perception of sound
response to toxic substance
response to organic substance
single organismal cell-cell adhesion
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
protein metabolic process
pituitary gland development
negative regulation of cell-cell adhesion
neuron projection development
regulation of protein localization
regulation of water loss via skin
adherens junction organization
response to drug
positive regulation of transcription factor import into nucleus
regulation of cysteine-type endopeptidase activity involved in apoptotic process
positive regulation of transcription, DNA-templated
negative regulation of epithelial cell proliferation
protein homooligomerization
intestinal epithelial cell development
salivary gland cavitation
regulation of branching involved in salivary gland morphogenesis
bicellular tight junction assembly
cellular response to amino acid stimulus
cellular response to lithium ion
cellular response to indole-3-methanol
protein localization to plasma membrane
establishment of protein localization to plasma membrane
negative regulation of canonical Wnt signaling pathway
cochlea development
regulation of protein localization to cell surface
regulation of neuron migration
glycoprotein binding
calcium ion binding
protein binding
beta-catenin binding
protein phosphatase binding
protein domain specific binding
ankyrin binding
GTPase activating protein binding
gamma-catenin binding
cell adhesion molecule binding
in utero embryonic development
trophectodermal cell differentiation
epithelial cell morphogenesis
homophilic cell adhesion via plasma membrane adhesion molecules
synapse assembly
sensory perception of sound
response to toxic substance
response to organic substance
single organismal cell-cell adhesion
calcium-dependent cell-cell adhesion via plasma membrane cell adhesion molecules
protein metabolic process
pituitary gland development
negative regulation of cell-cell adhesion
neuron projection development
regulation of protein localization
regulation of water loss via skin
adherens junction organization
response to drug
positive regulation of transcription factor import into nucleus
regulation of cysteine-type endopeptidase activity involved in apoptotic process
positive regulation of transcription, DNA-templated
negative regulation of epithelial cell proliferation
protein homooligomerization
intestinal epithelial cell development
salivary gland cavitation
regulation of branching involved in salivary gland morphogenesis
bicellular tight junction assembly
cellular response to amino acid stimulus
cellular response to lithium ion
cellular response to indole-3-methanol
protein localization to plasma membrane
establishment of protein localization to plasma membrane
negative regulation of canonical Wnt signaling pathway
cochlea development
regulation of protein localization to cell surface
regulation of neuron migration
glycoprotein binding
calcium ion binding
protein binding
beta-catenin binding
protein phosphatase binding
protein domain specific binding
ankyrin binding
GTPase activating protein binding
gamma-catenin binding
cell adhesion molecule binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_44_P142242 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 253601 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 315531 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 838678 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 895172 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 742458 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 703944 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 767733 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 203762 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 723060 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 557561 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 650509 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 519217 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 508653 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 572207 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 808655 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 161984 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 139625 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 241848 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 621275 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 547249 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 523507 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 274020 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 506824 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 601354 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 587489 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 777895 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 766105 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 583175 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 398337 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 91953 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 147107 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 526160 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 561154 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 111769 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 103907 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 1170 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 781625 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 254380 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 410991 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 555718 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 166098 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 416272 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 359011 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 899884 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 470160 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 562813 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 910009 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 624319 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 700362 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 194159 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 96656 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 126524 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 125298 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 21161 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 134883 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 153136 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 67849 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 177379 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 68859 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P142242 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P142242 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_44_P142242 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P142242 | - | - |
| Matsumoto (Agilent Rat cDNA Microarray G4105A) | 700290082 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 29031 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 68411 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 101603 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 91583 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 45779 | - | - |
| Agilent Rat cDNA Microarray (G4105A) | 700290082 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10807559 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10807555 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10807557 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10807546 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10807549 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10807556 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10807545 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10807553 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10807558 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10807543 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10807547 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10807548 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10807551 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10807544 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10807554 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10807550 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10807542 | - | - |
| Rat Genome 230 2.0 Array | 1386446_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1386947_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1386446_at | - | - |
| Rat Genome 230 2.0 Array | 1386947_at | - | - |
| Affymetrix HT Rat Focus Array | 1386446_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1386947_at | - | - |
| Affymetrix HT Rat Focus Array | 1386947_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1386446_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR1900004584.rn.1 | TC1900000526.rn.1 | RTA TC |
| Rat Expression Set 230 | 1386947_at | - | - |
| Rat Expression Set 230 | 1386947_PM_at | - | - |
| Rat Expression Set 230 | 1386446_at | - | - |
| Rat Expression Set 230 | 1386446_PM_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10807542 | - | - |
| Rat Genome U34 Set | rc_AA946081_s_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 21274732 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1371484 | - | - |
| RatRef-12 Expression BeadChip | ILMN_70002 | - | - |
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