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          • Home
          • › Search Tool
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          • › Rn00580551_m1
          See other RARA GE Assays ›
          Gene Symbol:
          Rara
          Gene Name:
          retinoic acid receptor, alpha
          Gene Aliases:
          -
          Chromosome Location:
          Chr.10: 86861031 - 86884224 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn00580551_m1
          Best Coverage
          Size
          Availability Inventoried
          Catalog # 4331182
          Price
          Your Price
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Rara
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_031528.2 NP_113716.2 3 - 4 695 73
          XM_008767945.1 XP_008766167.1 3 - 4 495 73
          GenBank mRNA BC099830.1 - 3 - 4 695 73
          U15211.1 - 3 - 4 701 73

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC1000001595.rn.1

          Set Membership:

          Ambion siRNA available Amplicon length between 71 and 85 Mammalian Gene Collection Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Rara

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription by RNA polymerase II
          ureteric bud development
          neural tube closure
          liver development
          glandular epithelial cell development
          outflow tract septum morphogenesis
          growth plate cartilage development
          transcription, DNA-templated
          regulation of transcription, DNA-templated
          transcription by RNA polymerase II
          protein phosphorylation
          signal transduction
          germ cell development
          spermatogenesis
          female pregnancy
          positive regulation of cell population proliferation
          negative regulation of cell population proliferation
          male gonad development
          positive regulation of gene expression
          negative regulation of gene expression
          positive regulation of phosphatidylinositol 3-kinase signaling
          negative regulation of translation
          hippocampus development
          intracellular estrogen receptor signaling pathway
          prostate gland development
          regulation of granulocyte differentiation
          negative regulation of granulocyte differentiation
          embryonic camera-type eye development
          regulation of myelination
          response to estradiol
          response to retinoic acid
          negative regulation of interferon-gamma production
          negative regulation of tumor necrosis factor production
          positive regulation of interleukin-13 production
          positive regulation of interleukin-4 production
          positive regulation of interleukin-5 production
          response to vitamin A
          response to cytokine
          multicellular organism growth
          regulation of apoptotic process
          negative regulation of apoptotic process
          apoptotic cell clearance
          steroid hormone mediated signaling pathway
          regulation of phosphatidylinositol 3-kinase activity
          response to ethanol
          negative regulation of cell differentiation
          positive regulation of T-helper 2 cell differentiation
          positive regulation of neuron differentiation
          positive regulation of cell cycle
          negative regulation of transcription, DNA-templated
          positive regulation of transcription, DNA-templated
          positive regulation of transcription by RNA polymerase II
          negative regulation of translational initiation
          regulation of synaptic plasticity
          retinoic acid receptor signaling pathway
          positive regulation of binding
          positive regulation of protein kinase B signaling
          ventricular cardiac muscle cell differentiation
          Sertoli cell fate commitment
          limb development
          face development
          bone development
          trachea cartilage development
          chondroblast differentiation
          negative regulation of cartilage development
          positive regulation of ERK1 and ERK2 cascade
          cellular response to lipopolysaccharide
          cellular response to retinoic acid
          cellular response to estrogen stimulus
          translation repressor activity, mRNA regulatory element binding
          transcription cis-regulatory region binding
          RNA polymerase II transcription regulatory region sequence-specific DNA binding
          retinoic acid binding
          DNA binding
          DNA-binding transcription factor activity
          steroid hormone receptor activity
          transcription coactivator activity
          transcription corepressor activity
          nuclear receptor activity
          signaling receptor binding
          protein binding
          transcription factor binding
          zinc ion binding
          enzyme binding
          protein domain specific binding
          chromatin DNA binding
          phosphatidylinositol 3-kinase regulator activity
          histone deacetylase binding
          protein kinase B binding
          sequence-specific DNA binding
          retinoic acid-responsive element binding
          protein heterodimerization activity
          mRNA 5'-UTR binding
          protein kinase A binding
          alpha-actinin binding

          MicroArray Probes:

          Agilent Affymetrix ABI Illumina

          Array Name Probe IDs Targets Target Type
          Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P022943 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 282057 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 13057 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 284781 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 886628 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 625282 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 595251 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 48835 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 722046 - -
          Agilent SurePrint G3 Rat CGH Microarray 4x180K 13730 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P022943 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P022943 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P022943 - -
          SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P461343 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 85081 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 43692 - -
          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Gene 1.0 ST Array 10738134 - -
          Affymetrix Rat Gene 1.0 ST Array 10738133 - -
          Affymetrix Rat Gene 1.0 ST Array 10738132 - -
          Affymetrix Rat Gene 1.0 ST Array 10738139 - -
          Affymetrix Rat Gene 1.0 ST Array 10738138 - -
          Affymetrix Rat Gene 1.0 ST Array 10738136 - -
          Affymetrix Rat Gene 1.0 ST Array 10738135 - -
          Affymetrix Rat Gene 1.0 ST Array 10738137 - -
          Affymetrix Rat Gene 1.1 ST Array 10738130 - -
          Rat Genome 230 2.0 Array 1390771_at - -
          Rat Genome 230 2.0 Array 1390771_PM_at - -
          Rat Genome 230 2.0 Array 1373579_at - -
          Rat Genome 230 2.0 Array 1368176_at - -
          Rat Genome 230 2.0 Array 1373579_PM_at - -
          Rat Genome 230 2.0 Array 1368176_PM_at - -
          Affymetrix HT Rat Focus Array 1368176_PM_at - -
          Affymetrix HT Rat Focus Array 1373579_PM_at - -
          Affymetrix HT Rat Focus Array 1373579_at - -
          Affymetrix HT Rat Focus Array 1368176_at - -
          Affymetrix Rat Clariom S Assay PSR1000014224.rn.1 TC1000001595.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR1000014227.rn.1 TC1000001595.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR1000014223.rn.1 TC1000001595.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR1000014225.rn.1 TC1000001595.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR1000014226.rn.1 TC1000001595.rn.1 RTA TC
          Rat Expression Set 230 1373579_at - -
          Rat Expression Set 230 1368176_at - -
          Rat Expression Set 230 1368176_PM_at - -
          Rat Expression Set 230 1373579_PM_at - -
          Affymetrix Rat Gene 1.0 ST Array 10738130 - -
          Rat Genome U34 Set AJ002940cds_s_at - -
          Rat Genome U34 Set U15211_at - -
          Rat Genome U34 Set U15211_g_at - -
          Rat Genome U34 Set U15211_g_at - -
          Rat Genome U34 Set AJ002940cds_s_at - -
          Rat Genome U34 Set U15211_at - -
          Rat Genome U34 Set U15211_g_at - -
          Rat Genome U34 Set U15211_at - -
          Array Name Probe IDs Targets Target Type
          ABI Rat Genome Survey Microarray 21517349 - -
          Array Name Probe IDs Targets Target Type
          Illumina ratRef-12 v1.0 expression beadchip ILMN_1368986 - -
          RatRef-12 Expression BeadChip ILMN_57446 - -

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          Host server : magellan-search-6659c69d8f-875ns:80/100.66.130.62:80.
          git-commit: 1827ea18100b76eacea45a9906e00cdefce2d263
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