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          • › Rn00585470_s1
          See other TWIST1 GE Assays ›
          Gene Symbol:
          Twist1
          Gene Name:
          twist family bHLH transcription factor 1
          Gene Aliases:
          Twist
          Chromosome Location:
          Chr.6: 53401241 - 53403235 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn00585470_s1
          Best Coverage
          Size
          Availability Inventoried
          Catalog # 4331182
          Price
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Twist1
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_053530.2 NP_445982.1 1 531 71
          GenBank mRNA BC166412.1 - 1 661 71

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC0600000603.rn.1

          Set Membership:

          Ambion siRNA available Amplicon length between 71 and 85 3' Most Mammalian Gene Collection Detect Genomic DNA Recommended Assay Rattus norvegicus Rat Tumor Metastasis Panel 1700 Inventoried Both primers and probe map within a single exon

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Twist1

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription by RNA polymerase II
          ossification
          osteoblast differentiation
          in utero embryonic development
          neuron migration
          neural tube closure
          aortic valve morphogenesis
          mitral valve morphogenesis
          endocardial cushion morphogenesis
          cardiac neural crest cell migration involved in outflow tract morphogenesis
          transcription by RNA polymerase II
          positive regulation of gene expression
          positive regulation of epithelial to mesenchymal transition
          negative regulation of phosphatidylinositol 3-kinase signaling
          cell differentiation
          embryonic limb morphogenesis
          regulation of bone mineralization
          positive regulation of fatty acid beta-oxidation
          negative regulation of tumor necrosis factor production
          positive regulation of interleukin-6 production
          positive regulation of tumor necrosis factor production
          negative regulation of histone phosphorylation
          negative regulation of histone acetylation
          embryonic forelimb morphogenesis
          embryonic hindlimb morphogenesis
          hindlimb morphogenesis
          negative regulation of peroxisome proliferator activated receptor signaling pathway
          odontogenesis
          embryonic digit morphogenesis
          negative regulation of apoptotic process
          negative regulation of DNA-binding transcription factor activity
          negative regulation of DNA damage response, signal transduction by p53 class mediator
          negative regulation of molecular function
          negative regulation of cell differentiation
          negative regulation of osteoblast differentiation
          negative regulation of striated muscle tissue development
          negative regulation of transcription, DNA-templated
          positive regulation of transcription by RNA polymerase II
          negative regulation of skeletal muscle tissue development
          embryonic cranial skeleton morphogenesis
          embryonic skeletal system morphogenesis
          positive regulation of epithelial cell proliferation
          roof of mouth development
          bone development
          cranial suture morphogenesis
          embryonic camera-type eye formation
          eyelid development in camera-type eye
          cardiac neural crest cell development involved in outflow tract morphogenesis
          cellular response to growth factor stimulus
          cellular response to hypoxia
          positive regulation of monocyte chemotactic protein-1 production
          positive regulation of cell motility
          negative regulation of oxidative phosphorylation uncoupler activity
          positive regulation of transcription regulatory region DNA binding
          negative regulation of cellular senescence
          negative regulation of double-strand break repair
          cell proliferation involved in heart valve development
          positive regulation of endocardial cushion to mesenchymal transition involved in heart valve formation
          DNA-binding transcription factor activity, RNA polymerase II-specific
          molecular_function
          DNA-binding transcription factor activity
          transcription factor binding
          protein domain specific binding
          protein homodimerization activity
          bHLH transcription factor binding
          protein heterodimerization activity
          E-box binding

          MicroArray Probes:

          Agilent Affymetrix ABI Illumina

          Array Name Probe IDs Targets Target Type
          Agilent Whole Rat Genome Microarray 4x44K v2 A_44_P200042 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 688875 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P200042 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P200042 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_44_P200042 - -
          SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P330417 - -
          SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P200042 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 18515 - -
          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Gene 1.0 ST Array 10884216 - -
          Affymetrix Rat Gene 1.0 ST Array 10884217 - -
          Affymetrix Rat Gene 1.1 ST Array 10884215 - -
          Rat Genome 230 2.0 Array 1378165_at - -
          Rat Genome 230 2.0 Array 1387750_PM_at - -
          Rat Genome 230 2.0 Array 1387750_at - -
          Rat Genome 230 2.0 Array 1378165_PM_at - -
          Affymetrix HT Rat Focus Array 1387750_PM_at - -
          Affymetrix HT Rat Focus Array 1387750_at - -
          Affymetrix HT Rat Focus Array 1378165_at - -
          Affymetrix HT Rat Focus Array 1378165_PM_at - -
          Affymetrix Rat Clariom S Assay PSR0600004311.rn.1 TC0600000603.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0600004312.rn.1 TC0600000603.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0600004313.rn.1 TC0600000603.rn.1 RTA TC
          Rat Expression Set 230 1387750_PM_at - -
          Rat Expression Set 230 1387750_at - -
          Rat Expression Set 230 1378165_PM_at - -
          Rat Expression Set 230 1378165_at - -
          Affymetrix Rat Gene 1.0 ST Array 10884215 - -
          Array Name Probe IDs Targets Target Type
          ABI Rat Genome Survey Microarray 21467836 - -
          ABI Rat Genome Survey Microarray 21511949 - -
          Array Name Probe IDs Targets Target Type
          Illumina ratRef-12 v1.0 expression beadchip ILMN_1367694 - -
          RatRef-12 Expression BeadChip ILMN_49649 - -

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