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          • › Rn00821186_g1
          See other APEX1 GE Assays ›
          Gene Symbol:
          Apex1
          Gene Name:
          APEX nuclease (multifunctional DNA repair enzyme) 1
          Gene Aliases:
          APE, Apex, REF-1
          Chromosome Location:
          Chr.15: 27849943 - 27852083 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn00821186_g1
          Best Coverage
          Size
          Availability Inventoried
          Catalog # 4331182
          Price
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Apex1
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_024148.1 NP_077062.1 3 - 4 348 104
          XM_006251913.1 XP_006251975.1 3 - 4 389 104
          GenBank mRNA AF309114.1 - 2 - 3 264 104
          AF311054.1 - 2 - 3 226 104
          BC078816.1 - 3 - 4 356 104
          D44495.1 - 3 - 4 348 104
          FQ220521.1 - 3 - 4 350 104
          L27076.1 - 3 - 4 332 104

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC1500000297.rn.1

          Set Membership:

          Ambion siRNA available Amplicon length greater than or equal to 101 Mammalian Gene Collection Detect Genomic DNA Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Apex1

          Gene Ontology Categories:

          Function(s) Process(es)

          DNA catabolic process, endonucleolytic
          DNA catabolic process, exonucleolytic
          DNA repair
          base-excision repair
          DNA recombination
          transcription, DNA-templated
          regulation of transcription, DNA-templated
          aging
          response to xenobiotic stimulus
          response to organonitrogen compound
          negative regulation of smooth muscle cell migration
          regulation of mRNA stability
          cell redox homeostasis
          positive regulation of DNA repair
          cellular response to hydrogen peroxide
          cellular response to cAMP
          cellular response to peptide hormone stimulus
          cellular response to organonitrogen compound
          DNA demethylation
          nucleic acid phosphodiester bond hydrolysis
          RNA phosphodiester bond hydrolysis, endonucleolytic
          positive regulation of G1/S transition of mitotic cell cycle
          DNA binding
          damaged DNA binding
          transcription coactivator activity
          RNA binding
          DNA-(apurinic or apyrimidinic site) endonuclease activity
          endonuclease activity
          endoribonuclease activity
          protein binding
          phosphoric diester hydrolase activity
          double-stranded DNA 3'-5' exodeoxyribonuclease activity
          3'-5' exonuclease activity
          oxidoreductase activity
          site-specific endodeoxyribonuclease activity, specific for altered base
          chromatin DNA binding
          protein-containing complex binding
          metal ion binding
          NF-kappaB binding

          MicroArray Probes:

          Agilent Affymetrix ABI Illumina

          Array Name Probe IDs Targets Target Type
          Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P116151 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 56229 - -
          Agilent SurePrint G3 Rat CGH Microarray 4x180K 7645 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P116151 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P116151 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P116151 - -
          SurePrint G3 Rat Gene Expression Microarray G4131A A_43_P14318 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 78325 - -
          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Gene 1.0 ST Array 10779813 - -
          Affymetrix Rat Gene 1.0 ST Array 10779814 - -
          Affymetrix Rat Gene 1.0 ST Array 10779815 - -
          Affymetrix Rat Gene 1.0 ST Array 10779812 - -
          Affymetrix Rat Gene 1.0 ST Array 10779817 - -
          Affymetrix Rat Gene 1.0 ST Array 10779816 - -
          Affymetrix Rat Gene 1.1 ST Array 10779811 - -
          Rat Genome 230 2.0 Array 1371217_PM_at - -
          Rat Genome 230 2.0 Array 1386910_a_at - -
          Rat Genome 230 2.0 Array 1371217_at - -
          Rat Genome 230 2.0 Array 1386910_PM_a_at - -
          Affymetrix HT Rat Focus Array 1386910_PM_a_at - -
          Affymetrix HT Rat Focus Array 1371217_PM_at - -
          Affymetrix HT Rat Focus Array 1371217_at - -
          Affymetrix HT Rat Focus Array 1386910_a_at - -
          Affymetrix Rat Clariom S Assay PSR1500002035.rn.1 TC1500000297.rn.1 RTA TC
          Rat Expression Set 230 1371217_at - -
          Rat Expression Set 230 1386910_PM_a_at - -
          Rat Expression Set 230 1371217_PM_at - -
          Rat Expression Set 230 1386910_a_at - -
          Affymetrix Rat Gene 1.0 ST Array 10779811 - -
          Rat Genome U34 Set D44495_s_at - -
          Rat Genome U34 Set D44495_s_at - -
          Rat Genome U34 Set D44495_s_at - -
          Array Name Probe IDs Targets Target Type
          ABI Rat Genome Survey Microarray 22025274 - -
          Array Name Probe IDs Targets Target Type
          Illumina ratRef-12 v1.0 expression beadchip ILMN_1371668 - -
          RatRef-12 Expression BeadChip ILMN_69130 - -

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