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          • Home
          • › Search Tool
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          • › Rn01193634_g1
          See other HDAC2 GE Assays ›
          Gene Symbol:
          Hdac2
          Gene Name:
          histone deacetylase 2
          Gene Aliases:
          -
          Chromosome Location:
          Chr.20: 43084870 - 43108198 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn01193634_g1
          Best Coverage
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          Availability Inventoried
          Catalog # 4331182
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Hdac2
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_053447.1 NP_445899.1 9 - 10 1181 86
          GenBank mRNA AF321130.1 - 1 - 2 39 86
          BC161939.1 - 9 - 10 1156 86

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC2000001653.rn.1

          Set Membership:

          Amplicon length between 86 and 100 Mammalian Gene Collection Detect Genomic DNA Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription by RNA polymerase II
          response to amphetamine
          cardiac muscle hypertrophy
          chromatin remodeling
          transcription, DNA-templated
          protein deacetylation
          positive regulation of cell population proliferation
          response to xenobiotic stimulus
          epidermal cell differentiation
          positive regulation of epithelial to mesenchymal transition
          negative regulation of neuron projection development
          dendrite development
          histone deacetylation
          hippocampus development
          neuron differentiation
          response to caffeine
          response to lipopolysaccharide
          positive regulation of interleukin-1 production
          positive regulation of tumor necrosis factor production
          circadian regulation of gene expression
          cellular response to heat
          response to nicotine
          response to cocaine
          odontogenesis of dentin-containing tooth
          positive regulation of tyrosine phosphorylation of STAT protein
          embryonic digit morphogenesis
          negative regulation of apoptotic process
          negative regulation of DNA binding
          negative regulation of DNA-binding transcription factor activity
          positive regulation of proteolysis
          negative regulation of transcription, DNA-templated
          positive regulation of transcription by RNA polymerase II
          behavioral response to ethanol
          positive regulation of oligodendrocyte differentiation
          positive regulation of DNA-binding transcription factor activity
          regulation of protein kinase B signaling
          cardiac muscle cell development
          response to hyperoxia
          negative regulation of cardiac muscle cell proliferation
          regulation of sarcomere organization
          hair follicle placode formation
          negative regulation of dendritic spine development
          eyelid development in camera-type eye
          fungiform papilla formation
          histone H3-K9 modification
          cellular response to hydrogen peroxide
          histone H3 deacetylation
          histone H4 deacetylation
          cellular response to retinoic acid
          cellular response to transforming growth factor beta stimulus
          negative regulation of canonical Wnt signaling pathway
          regulation of protein deacetylation
          cellular response to dopamine
          negative regulation of peptidyl-lysine acetylation
          negative regulation of intrinsic apoptotic signaling pathway
          RNA polymerase II cis-regulatory region sequence-specific DNA binding
          core promoter sequence-specific DNA binding
          chromatin binding
          DNA-binding transcription factor activity
          RNA binding
          histone deacetylase activity
          protein binding
          transcription factor binding
          deacetylase activity
          enzyme binding
          heat shock protein binding
          chromatin DNA binding
          nucleosomal DNA binding
          NAD-dependent histone deacetylase activity (H3-K14 specific)
          protein deacetylase activity
          Krueppel-associated box domain binding
          sequence-specific DNA binding
          NAD-dependent histone deacetylase activity (H3-K9 specific)
          NAD-dependent histone deacetylase activity (H4-K16 specific)
          RNA polymerase II-specific DNA-binding transcription factor binding
          NAD-dependent histone deacetylase activity (H3-K18 specific)

          MicroArray Probes:

          Affymetrix ABI

          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Clariom S Assay PSR2000013506.rn.1 TC2000001653.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR2000013505.rn.1 TC2000001653.rn.1 RTA TC
          Array Name Probe IDs Targets Target Type
          ABI Rat Genome Survey Microarray 21336220 - -

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