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          • › Rn01399592_g1
          See other HDAC1L GE Assays ›
          Gene Symbol:
          Hdac1l Hdac1
          Gene Name:
          histone deacetylase 1-like
          histone deacetylase 1
          Gene Aliases:
          -
          -
          Chromosome Location:
          Chr.9: 84893145 - 84894599 on Build Rnor_6.0
          Chromosome Location:
          Chr.5: 147716664 - 147743723 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          -
          Assay ID Rn01399592_g1
          Size
          Availability Inventoried
          Catalog # 4331182
          Price
          Your Price
          Online offer:
          Check your price ›
          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Hdac1l
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_053446.1 NP_445898.1 1 1051 82
          Gene Symbol: Hdac1
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_001025409.1 NP_001020580.1 10 1063 82
          GenBank mRNA BC059156.1 - 10 1080 82
          BC097943.1 - 10 1063 82
          BC107476.1 - 10 1060 82

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC0500003672.rn.1

          Set Membership:

          Ambion siRNA available Amplicon length between 71 and 85 3' Most Mammalian Gene Collection Detect Genomic DNA Rattus norvegicus 1700 Inventoried Amplicon spans exons and probe does not span exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Hdac1l
          Click here to find siRNAs for Gene Hdac1

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription by RNA polymerase II
          chromatin remodeling
          transcription, DNA-templated
          biological_process
          positive regulation of cell population proliferation
          circadian regulation of gene expression
          negative regulation by host of viral transcription
          negative regulation of transcription, DNA-templated
          positive regulation of transcription by RNA polymerase II
          negative regulation of androgen receptor signaling pathway
          histone H3-K9 modification
          histone H3 deacetylation
          histone H4 deacetylation
          response to amphetamine
          protein deacetylation
          endoderm development
          circadian rhythm
          negative regulation of cell population proliferation
          response to xenobiotic stimulus
          epidermal cell differentiation
          negative regulation of myotube differentiation
          histone deacetylation
          hippocampus development
          neuron differentiation
          response to caffeine
          response to lipopolysaccharide
          positive regulation of interleukin-1 production
          positive regulation of tumor necrosis factor production
          cellular response to oxidative stress
          odontogenesis of dentin-containing tooth
          positive regulation of tyrosine phosphorylation of STAT protein
          embryonic digit morphogenesis
          negative regulation of apoptotic process
          negative regulation of I-kappaB kinase/NF-kappaB signaling
          negative regulation of neuron apoptotic process
          positive regulation of transcription, DNA-templated
          negative regulation of insulin secretion
          positive regulation of oligodendrocyte differentiation
          response to hyperoxia
          hair follicle placode formation
          eyelid development in camera-type eye
          fungiform papilla formation
          cellular response to tumor necrosis factor
          negative regulation of canonical Wnt signaling pathway
          positive regulation of chemokine (C-X-C motif) ligand 2 production
          positive regulation of type B pancreatic cell apoptotic process
          negative regulation of peptidyl-lysine acetylation
          negative regulation of intrinsic apoptotic signaling pathway
          transcription cis-regulatory region binding
          RNA polymerase II cis-regulatory region sequence-specific DNA binding
          core promoter sequence-specific DNA binding
          molecular_function
          transcription corepressor activity
          histone deacetylase activity
          deacetylase activity
          nucleosomal DNA binding
          NAD-dependent histone deacetylase activity (H3-K14 specific)
          histone deacetylase binding
          NAD-dependent histone deacetylase activity (H3-K9 specific)
          NAD-dependent histone deacetylase activity (H4-K16 specific)
          RNA polymerase II-specific DNA-binding transcription factor binding
          NAD-dependent histone deacetylase activity (H3-K18 specific)
          DNA binding
          chromatin binding
          DNA-binding transcription factor activity
          protein binding
          transcription factor binding
          enzyme binding
          protein deacetylase activity
          Krueppel-associated box domain binding
          protein-containing complex binding
          protein N-terminus binding
          DNA-binding transcription factor binding

          MicroArray Probes:

          Agilent Affymetrix ABI Illumina

          Array Name Probe IDs Targets Target Type
          Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P122452 - -
          Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P118296 - -
          Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P055758 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 706241 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 972142 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 943472 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 277395 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 782646 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 270752 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 663252 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 927450 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 117987 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 714971 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 183665 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 344691 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 558942 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 486373 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 385763 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 957496 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 432256 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 920922 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 481123 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 132559 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 333428 - -
          Agilent SurePrint G3 Rat CGH Microarray 4x180K 108273 - -
          Agilent SurePrint G3 Rat CGH Microarray 4x180K 89968 - -
          Agilent SurePrint G3 Rat CGH Microarray 4x180K 138208 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P118296 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P122452 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P055758 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P055758 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P118296 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P122452 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P118296 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P122452 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P055758 - -
          SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P400400 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 58340 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 1764 - -
          Agilent Rat Genome CGH Microarray 105A (G4436A) 99493 - -
          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Gene 1.0 ST Array 10880014 - -
          Affymetrix Rat Gene 1.0 ST Array 10880020 - -
          Affymetrix Rat Gene 1.0 ST Array 10880016 - -
          Affymetrix Rat Gene 1.0 ST Array 10880013 - -
          Affymetrix Rat Gene 1.0 ST Array 10880018 - -
          Affymetrix Rat Gene 1.0 ST Array 10880017 - -
          Affymetrix Rat Gene 1.0 ST Array 10929262 - -
          Affymetrix Rat Gene 1.0 ST Array 10880015 - -
          Affymetrix Rat Gene 1.0 ST Array 10880019 - -
          Affymetrix Rat Gene 1.1 ST Array 10929261 - -
          Affymetrix Rat Gene 1.1 ST Array 10880012 - -
          Rat Genome 230 2.0 Array 1388761_at - -
          Rat Genome 230 2.0 Array 1396820_PM_at - -
          Rat Genome 230 2.0 Array 1396820_at - -
          Rat Genome 230 2.0 Array 1388761_PM_at - -
          Affymetrix HT Rat Focus Array 1388761_at - -
          Affymetrix HT Rat Focus Array 1396820_at - -
          Affymetrix HT Rat Focus Array 1388761_PM_at - -
          Affymetrix HT Rat Focus Array 1396820_PM_at - -
          Affymetrix Rat Clariom S Assay PSR0500027365.rn.1 TC0500003672.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0500027367.rn.1 TC0500003672.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0500027362.rn.1 TC0500003672.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0500027366.rn.1 TC0500003672.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0500027363.rn.1 TC0500003672.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0500027364.rn.1 TC0500003672.rn.1 RTA TC
          Rat Expression Set 230 1388761_at - -
          Rat Expression Set 230 1388761_PM_at - -
          Rat Expression Set 230 1396820_PM_at - -
          Rat Expression Set 230 1396820_at - -
          Affymetrix Rat Gene 1.0 ST Array 10929261 - -
          Affymetrix Rat Gene 1.0 ST Array 10880012 - -
          Rat Genome U34 Set rc_AA818418_at - -
          Array Name Probe IDs Targets Target Type
          ABI Rat Genome Survey Microarray 20758494 - -
          Array Name Probe IDs Targets Target Type
          Illumina ratRef-12 v1.0 expression beadchip ILMN_1357565 - -

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