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- Gene Symbol:
-
Pax2 - Gene Name:
- paired box 2
- Gene Aliases:
- -
- Chromosome Location:
- Chr.1: 264493579 - 264583883 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Pax2 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_001106361.1 | NP_001099831.1 | 3 - 4 | 437 | 67 | |
| XM_006231443.2 | XP_006231505.1 | 4 - 5 | 1155 | 67 | ||
| XM_008760403.1 | XP_008758625.1 | 4 - 5 | 1152 | 67 | ||
| XM_008760404.1 | XP_008758626.1 | 4 - 5 | 1155 | 67 | ||
| XM_008760405.1 | XP_008758627.1 | 4 - 5 | 1152 | 67 | ||
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC0100003689.rn.1Set Membership: |
Amplicon length less than or equal to 70
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Gene Ontology Categories:
Function(s)
Process(es)
negative regulation of transcription by RNA polymerase II
urogenital system development
metanephros development
ureteric bud development
branching involved in ureteric bud morphogenesis
cell fate determination
kidney development
mesonephros development
neural tube closure
optic cup morphogenesis involved in camera-type eye development
mesenchymal to epithelial transition involved in metanephros morphogenesis
retinal pigment epithelium development
transcription, DNA-templated
transcription by RNA polymerase II
mesodermal cell fate specification
aging
positive regulation of cell population proliferation
glial cell differentiation
optic nerve development
optic nerve morphogenesis
optic nerve structural organization
vestibulocochlear nerve formation
pancreas development
response to nutrient levels
regulation of metanephros size
ureter maturation
pronephric field specification
inner ear morphogenesis
regulation of apoptotic process
camera-type eye development
negative regulation of apoptotic process
regulation of programmed cell death
negative regulation of programmed cell death
negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
protein kinase B signaling
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
negative regulation of cytolysis
positive regulation of transcription by RNA polymerase II
animal organ development
pronephros development
brain morphogenesis
stem cell differentiation
positive regulation of epithelial cell proliferation
mesenchymal to epithelial transition
paramesonephric duct development
optic chiasma development
cellular response to hydrogen peroxide
cellular response to mechanical stimulus
cellular response to retinoic acid
cellular response to glucose stimulus
cellular response to epidermal growth factor stimulus
renal system development
metanephric mesenchyme development
positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis
metanephric mesenchymal cell differentiation
mesonephric tubule development
mesonephric tubule formation
mesonephric duct development
nephric duct formation
ureter development
ureter morphogenesis
metanephric collecting duct development
metanephric epithelium development
metanephric distal convoluted tubule development
metanephric nephron tubule formation
positive regulation of metanephric glomerulus development
negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis
regulation of metanephric nephron tubule epithelial cell differentiation
reactive oxygen species metabolic process
cochlea development
cochlea morphogenesis
positive regulation of branching involved in ureteric bud morphogenesis
negative regulation of mesenchymal cell apoptotic process involved in metanephros development
negative regulation of apoptotic process involved in metanephric collecting duct development
negative regulation of apoptotic process involved in metanephric nephron tubule development
negative regulation of reactive oxygen species metabolic process
positive regulation of metanephric DCT cell differentiation
positive regulation of optic nerve formation
transcription cis-regulatory region binding
RNA polymerase II cis-regulatory region sequence-specific DNA binding
cis-regulatory region sequence-specific DNA binding
DNA binding
DNA-binding transcription factor activity
transcription factor binding
superoxide-generating NAD(P)H oxidase activity
sequence-specific DNA binding
C2H2 zinc finger domain binding
negative regulation of transcription by RNA polymerase II
urogenital system development
metanephros development
ureteric bud development
branching involved in ureteric bud morphogenesis
cell fate determination
kidney development
mesonephros development
neural tube closure
optic cup morphogenesis involved in camera-type eye development
mesenchymal to epithelial transition involved in metanephros morphogenesis
retinal pigment epithelium development
transcription, DNA-templated
transcription by RNA polymerase II
mesodermal cell fate specification
aging
positive regulation of cell population proliferation
glial cell differentiation
optic nerve development
optic nerve morphogenesis
optic nerve structural organization
vestibulocochlear nerve formation
pancreas development
response to nutrient levels
regulation of metanephros size
ureter maturation
pronephric field specification
inner ear morphogenesis
regulation of apoptotic process
camera-type eye development
negative regulation of apoptotic process
regulation of programmed cell death
negative regulation of programmed cell death
negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
protein kinase B signaling
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
negative regulation of cytolysis
positive regulation of transcription by RNA polymerase II
animal organ development
pronephros development
brain morphogenesis
stem cell differentiation
positive regulation of epithelial cell proliferation
mesenchymal to epithelial transition
paramesonephric duct development
optic chiasma development
cellular response to hydrogen peroxide
cellular response to mechanical stimulus
cellular response to retinoic acid
cellular response to glucose stimulus
cellular response to epidermal growth factor stimulus
renal system development
metanephric mesenchyme development
positive regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis
metanephric mesenchymal cell differentiation
mesonephric tubule development
mesonephric tubule formation
mesonephric duct development
nephric duct formation
ureter development
ureter morphogenesis
metanephric collecting duct development
metanephric epithelium development
metanephric distal convoluted tubule development
metanephric nephron tubule formation
positive regulation of metanephric glomerulus development
negative regulation of mesenchymal cell apoptotic process involved in metanephric nephron morphogenesis
regulation of metanephric nephron tubule epithelial cell differentiation
reactive oxygen species metabolic process
cochlea development
cochlea morphogenesis
positive regulation of branching involved in ureteric bud morphogenesis
negative regulation of mesenchymal cell apoptotic process involved in metanephros development
negative regulation of apoptotic process involved in metanephric collecting duct development
negative regulation of apoptotic process involved in metanephric nephron tubule development
negative regulation of reactive oxygen species metabolic process
positive regulation of metanephric DCT cell differentiation
positive regulation of optic nerve formation
transcription cis-regulatory region binding
RNA polymerase II cis-regulatory region sequence-specific DNA binding
cis-regulatory region sequence-specific DNA binding
DNA binding
DNA-binding transcription factor activity
transcription factor binding
superoxide-generating NAD(P)H oxidase activity
sequence-specific DNA binding
C2H2 zinc finger domain binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P115457 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 173541 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 970519 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 589361 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 813118 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 729801 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 366842 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 257255 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 894203 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 621243 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 823332 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 765096 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 184563 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 214223 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 204571 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 398356 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 302003 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 640351 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 422873 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 702877 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 178657 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 747273 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 778369 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 532906 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 170658 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 182638 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 559060 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 900746 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 847863 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 373394 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 458240 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 836382 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 136818 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 358266 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 313282 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 969772 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 633556 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 603301 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 319694 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 558450 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 126368 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 370947 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 419518 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 218424 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 674383 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 360594 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 558872 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 563838 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 629226 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 221171 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 113472 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 658242 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 391777 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 302000 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 575377 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 820808 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 859225 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 61824 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 176425 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 137702 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 166088 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 85971 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 105097 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 66786 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 129096 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 77694 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P115457 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P115457 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P115457 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_43_P19663 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 2563 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10715592 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10715590 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10715586 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10715588 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10715584 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10715589 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10715595 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10715591 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10715585 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10715587 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10715594 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10715575 | - | - |
| Affymetrix Rat Clariom S Assay | PSR0100029965.rn.1 | TC0100003689.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0100029966.rn.1 | TC0100003689.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0100029964.rn.1 | TC0100003689.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0100029967.rn.1 | TC0100003689.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0100029962.rn.1 | TC0100003689.rn.1 | RTA TC |
| Affymetrix Rat Gene 1.0 ST Array | 10715575 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 21789305 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1365982 | - | - |
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