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          • Home
          • › Search Tool
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          • › Rn01459915_m1
          See other SPOP GE Assays ›
          Gene Symbol:
          Spop
          Gene Name:
          speckle-type POZ protein
          Gene Aliases:
          -
          Chromosome Location:
          Chr.10: 83231197 - 83311987 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn01459915_m1
          Best Coverage
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          Availability Inventoried
          Catalog # 4331182
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Spop
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_001100496.1 NP_001093966.1 3 - 4 361 96
          XM_006247180.2 XP_006247242.1 4 - 5 1165 96
          XM_006247181.2 XP_006247243.1 5 - 6 472 96
          XM_006247182.2 XP_006247244.1 4 - 5 421 96
          XM_008767968.1 XP_008766190.1 4 - 5 517 96
          XM_008767969.1 XP_008766191.1 5 - 6 439 96
          GenBank mRNA BC091435.1 - 1 - 2 87 96
          BC166743.1 - 3 - 4 361 96
          FQ217100.1 - 5 - 6 669 96

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC1000001471.rn.1

          Set Membership:

          Amplicon length between 86 and 100 Mammalian Gene Collection Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription by RNA polymerase II
          ubiquitin-dependent protein catabolic process
          glucose homeostasis
          proteasome-mediated ubiquitin-dependent protein catabolic process
          negative regulation of DNA-binding transcription factor activity
          positive regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
          positive regulation of type B pancreatic cell apoptotic process
          ubiquitin protein ligase binding

          MicroArray Probes:

          Affymetrix ABI

          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Clariom S Assay PSR1000013181.rn.1 TC1000001471.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR1000013183.rn.1 TC1000001471.rn.1 RTA TC
          Array Name Probe IDs Targets Target Type
          ABI Rat Genome Survey Microarray 21079308 - -

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