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          • Home
          • › Search Tool
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          • › Rn01503063_m1
          See other CRY1 GE Assays ›
          Gene Symbol:
          Cry1
          Gene Name:
          cryptochrome circadian clock 1
          Gene Aliases:
          -
          Chromosome Location:
          Chr.7: 24534591 - 24634098 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn01503063_m1
          Best Coverage
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          Availability Inventoried
          Catalog # 4331182
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Cry1
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_198750.2 NP_942045.2 7 - 8 1671 65
          XM_008765225.1 XP_008763447.1 7 - 8 1695 65
          GenBank mRNA AF545855.1 - 7 - 8 1235 65
          BC107677.1 - 7 - 8 1671 65

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC0700000390.rn.1

          Set Membership:

          Ambion siRNA available Amplicon length less than or equal to 70 Mammalian Gene Collection Recommended Assay Rattus norvegicus Inventoried Probe spans exons

          Matching Ambion siRNAs:

          Click here to find siRNAs for Gene Cry1

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription by RNA polymerase II
          gluconeogenesis
          DNA repair
          transcription, DNA-templated
          DNA damage induced protein phosphorylation
          signal transduction
          circadian rhythm
          protein-chromophore linkage
          lipid storage
          negative regulation of protein ubiquitination
          response to insulin
          circadian regulation of gene expression
          response to glucagon
          glucose homeostasis
          regulation of circadian rhythm
          negative regulation of circadian rhythm
          entrainment of circadian clock by photoperiod
          negative regulation of G protein-coupled receptor signaling pathway
          negative regulation of transcription, DNA-templated
          regulation of DNA damage checkpoint
          negative regulation of glucocorticoid receptor signaling pathway
          negative regulation of glucocorticoid secretion
          nucleotide binding
          core promoter sequence-specific DNA binding
          double-stranded DNA binding
          deoxyribodipyrimidine photo-lyase activity
          DNA photolyase activity
          DNA (6-4) photolyase activity
          transcription factor binding
          photoreceptor activity
          kinase binding
          protein kinase binding
          phosphatase binding
          histone deacetylase binding
          ubiquitin binding

          MicroArray Probes:

          Affymetrix

          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Clariom S Assay PSR0700003334.rn.1 TC0700000390.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0700003335.rn.1 TC0700000390.rn.1 RTA TC

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