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          • › Rn01512482_m1
          See other NKX2-1 GE Assays ›
          Gene Symbol:
          Nkx2-1
          Gene Name:
          NK2 homeobox 1
          Gene Aliases:
          TTF1, Titf1
          Chromosome Location:
          Chr.6: 77418096 - 77423383 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn01512482_m1
          Best Coverage
          Size
          Availability Inventoried
          Catalog # 4331182
          Price
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Nkx2-1
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_013093.1 NP_037225.1 1 - 2 373 105
          XM_006240116.2 XP_006240178.1 2 - 3 654 105
          XM_006240117.2 XP_006240179.1 2 - 3 727 105
          XM_006240118.2 XP_006240180.1 2 - 3 1238 105
          GenBank mRNA AB894119.1 - 1 - 2 372 105
          X53858.1 - 1 - 2 373 105

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          More Information


          Updated Mapping Information

          This assay targets the same location as RTA transcript cluster(s) TC0600002504.rn.1

          Set Membership:

          Amplicon length greater than or equal to 101 3' Most Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription by RNA polymerase II
          neuron migration
          regulation of blood volume by renin-angiotensin
          transcription, DNA-templated
          regulation of transcription, DNA-templated
          regulation of transcription by RNA polymerase II
          transcription by RNA polymerase II
          phospholipid metabolic process
          pattern specification process
          axon guidance
          brain development
          endoderm development
          circadian rhythm
          locomotory behavior
          feeding behavior
          response to hormone
          animal organ morphogenesis
          positive regulation of gene expression
          negative regulation of epithelial to mesenchymal transition
          telencephalon development
          globus pallidus development
          hippocampus development
          cerebral cortex cell migration
          forebrain dorsal/ventral pattern formation
          forebrain neuron fate commitment
          forebrain neuron differentiation
          cerebral cortex GABAergic interneuron differentiation
          cerebral cortex neuron differentiation
          pituitary gland development
          telencephalon cell migration
          lung development
          negative regulation of cell migration
          negative regulation of transforming growth factor beta receptor signaling pathway
          thyroid gland development
          forebrain development
          developmental induction
          response to lipopolysaccharide
          Leydig cell differentiation
          hyperosmotic salinity response
          positive regulation of circadian rhythm
          response to ethanol
          negative regulation of transcription, DNA-templated
          positive regulation of transcription, DNA-templated
          positive regulation of transcription by RNA polymerase II
          development of primary female sexual characteristics
          anatomical structure formation involved in morphogenesis
          neuron fate commitment
          oligodendrocyte differentiation
          lung saccule development
          epithelial tube branching involved in lung morphogenesis
          club cell differentiation
          type II pneumocyte differentiation
          transcription cis-regulatory region binding
          RNA polymerase II transcription regulatory region sequence-specific DNA binding
          DNA-binding transcription factor activity, RNA polymerase II-specific
          core promoter sequence-specific DNA binding
          intronic transcription regulatory region sequence-specific DNA binding
          DNA-binding transcription activator activity, RNA polymerase II-specific
          DNA binding
          DNA-binding transcription factor activity
          protein binding
          enzyme binding
          sequence-specific DNA binding

          MicroArray Probes:

          Agilent Affymetrix ABI Illumina

          Array Name Probe IDs Targets Target Type
          Agilent Whole Rat Genome Microarray 4x44K v2 A_42_P563276 - -
          Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P097669 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 783237 - -
          Agilent SurePrint G3 Rat CGH Microarray 1x1M 96343 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_42_P563276 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P097669 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P097669 - -
          Agilent Whole Rat Genome Microarray 4x44K v3 A_42_P563276 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_42_P563276 - -
          Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P097669 - -
          SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P442931 - -
          Matsumoto (Agilent Rat cDNA Microarray G4105A) 702134734 - -
          Agilent Rat cDNA Microarray (G4105A) 702134734 - -
          Array Name Probe IDs Targets Target Type
          Affymetrix Rat Gene 1.0 ST Array 10890086 - -
          Affymetrix Rat Gene 1.0 ST Array 10890085 - -
          Affymetrix Rat Gene 1.1 ST Array 10890084 - -
          Rat Genome 230 2.0 Array 1371010_PM_at - -
          Rat Genome 230 2.0 Array 1371010_at - -
          Affymetrix HT Rat Focus Array 1371010_at - -
          Affymetrix HT Rat Focus Array 1371010_PM_at - -
          Affymetrix Rat Clariom S Assay PSR0600017843.rn.1 TC0600002504.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0600017840.rn.1 TC0600002504.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0600017838.rn.1 TC0600002504.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0600017839.rn.1 TC0600002504.rn.1 RTA TC
          Affymetrix Rat Clariom S Assay PSR0600017842.rn.1 TC0600002504.rn.1 RTA TC
          Rat Expression Set 230 1371010_PM_at - -
          Rat Expression Set 230 1371010_at - -
          Affymetrix Rat Gene 1.0 ST Array 10890084 - -
          Rat Genome U34 Set X53858_at - -
          Rat Genome U34 Set D38035cds_s_at - -
          Array Name Probe IDs Targets Target Type
          ABI Rat Genome Survey Microarray 21387070 - -
          Array Name Probe IDs Targets Target Type
          Illumina ratRef-12 v1.0 expression beadchip ILMN_1359201 - -

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