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- Gene Symbol:
-
Hmgb1 - Gene Name:
- high mobility group box 1
- Gene Aliases:
- Ac2-008, Hmg1
- Chromosome Location:
- Chr.12: 7090927 - 7092190 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Hmgb1 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_012963.2 | NP_037095.1 | 2143 | 94 | ||
| GenBank mRNA | BC081839.1 | - | 2143 | 94 | ||
Back To TopMore Information
Additional Information:
Based on assay re-evaluation, this assay may detect genomic DNA. Please contact Tech Support if you need more information.
Set Membership: |
Ambion siRNA available
Amplicon length between 86 and 100
3' Most
Mammalian Gene Collection
Detect Genomic DNA
Recommended Assay
Rattus norvegicus
1700
Inventoried
Both primers and probe map within a single exon
|
Matching Ambion siRNAs:
Gene Ontology Categories:
Function(s)
Process(es)
negative regulation of transcription by RNA polymerase II
cell morphogenesis
eye development
positive regulation of protein phosphorylation
positive regulation of mesenchymal cell proliferation
inflammatory response to antigenic stimulus
base-excision repair, DNA ligation
chromatin remodeling
regulation of transcription, DNA-templated
regulation of transcription by RNA polymerase II
chemotaxis
nervous system development
circadian rhythm
negative regulation of DNA replication
positive regulation of cell population proliferation
response to heat
response to xenobiotic stimulus
response to glucose
positive regulation of cell death
positive regulation of neuron projection development
positive regulation of smooth muscle cell migration
negative regulation of RNA polymerase II transcription preinitiation complex assembly
lung development
positive regulation of cell migration
neuron projection development
actin cytoskeleton reorganization
DNA geometric change
response to lipopolysaccharide
response to insulin
positive regulation of myeloid cell apoptotic process
V(D)J recombination
response to interferon-gamma
positive regulation of apoptotic process
positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
positive regulation of DNA binding
positive regulation of myeloid cell differentiation
positive regulation of myoblast differentiation
positive regulation of glycogen catabolic process
positive regulation of protein kinase activity
positive regulation of mitotic cell cycle
positive regulation of transcription by RNA polymerase II
regulation of inflammatory response
male-specific defense response to bacterium
induction of positive chemotaxis
response to glucocorticoid
myoblast proliferation
cellular response to interleukin-1
four-way junction DNA binding
open form four-way junction DNA binding
crossed form four-way junction DNA binding
DNA binding
bent DNA binding
chromatin binding
double-stranded DNA binding
single-stranded DNA binding
DNA-binding transcription factor activity
RNA binding
cytokine activity
protein binding
5S rRNA binding
transcription factor binding
heparin binding
DNA binding, bending
calcium-dependent protein kinase regulator activity
protein kinase activator activity
peptide binding
protein dimerization activity
RAGE receptor binding
glycolipid binding
DNA-binding transcription factor binding
negative regulation of transcription by RNA polymerase II
cell morphogenesis
eye development
positive regulation of protein phosphorylation
positive regulation of mesenchymal cell proliferation
inflammatory response to antigenic stimulus
base-excision repair, DNA ligation
chromatin remodeling
regulation of transcription, DNA-templated
regulation of transcription by RNA polymerase II
chemotaxis
nervous system development
circadian rhythm
negative regulation of DNA replication
positive regulation of cell population proliferation
response to heat
response to xenobiotic stimulus
response to glucose
positive regulation of cell death
positive regulation of neuron projection development
positive regulation of smooth muscle cell migration
negative regulation of RNA polymerase II transcription preinitiation complex assembly
lung development
positive regulation of cell migration
neuron projection development
actin cytoskeleton reorganization
DNA geometric change
response to lipopolysaccharide
response to insulin
positive regulation of myeloid cell apoptotic process
V(D)J recombination
response to interferon-gamma
positive regulation of apoptotic process
positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
positive regulation of DNA binding
positive regulation of myeloid cell differentiation
positive regulation of myoblast differentiation
positive regulation of glycogen catabolic process
positive regulation of protein kinase activity
positive regulation of mitotic cell cycle
positive regulation of transcription by RNA polymerase II
regulation of inflammatory response
male-specific defense response to bacterium
induction of positive chemotaxis
response to glucocorticoid
myoblast proliferation
cellular response to interleukin-1
four-way junction DNA binding
open form four-way junction DNA binding
crossed form four-way junction DNA binding
DNA binding
bent DNA binding
chromatin binding
double-stranded DNA binding
single-stranded DNA binding
DNA-binding transcription factor activity
RNA binding
cytokine activity
protein binding
5S rRNA binding
transcription factor binding
heparin binding
DNA binding, bending
calcium-dependent protein kinase regulator activity
protein kinase activator activity
peptide binding
protein dimerization activity
RAGE receptor binding
glycolipid binding
DNA-binding transcription factor binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P031945 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P299671 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P072803 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P072803 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P299671 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P031945 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P299671 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P072803 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P031945 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P031945 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P072803 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P299671 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_43_P15527 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P103832 | - | - |
| Matsumoto (Agilent Rat cDNA Microarray G4105A) | 702120630 | - | - |
| Matsumoto (Agilent Rat cDNA Microarray G4105A) | 700543746 | - | - |
| Agilent Rat cDNA Microarray (G4105A) | 700543746 | - | - |
| Agilent Rat cDNA Microarray (G4105A) | 702120630 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10709777 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10729506 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10937359 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10923209 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10861907 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10729505 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10861906 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10871285 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10867798 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10788032 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10729503 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10812016 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10818697 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10763432 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10704917 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10763431 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10709776 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10902248 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10834137 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10742834 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10709778 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10903226 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10825180 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10813356 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10729504 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10824883 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10906454 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10804451 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10739594 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10812015 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10902247 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10937358 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10729502 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10861905 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10834136 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10871284 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10813355 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10788031 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10704916 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10739593 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10867797 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10742833 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10903225 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10906453 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10763430 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10825179 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10709775 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10923208 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10824882 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10804449 | - | - |
| Rat Genome 230 2.0 Array | 1368042_PM_a_at | - | - |
| Rat Genome 230 2.0 Array | 1368042_a_at | - | - |
| Affymetrix HT Rat Focus Array | 1368042_PM_a_at | - | - |
| Affymetrix HT Rat Focus Array | 1388783_at | - | - |
| Affymetrix HT Rat Focus Array | 1368042_a_at | - | - |
| Affymetrix HT Rat Focus Array | 1388783_PM_at | - | - |
| Rat Expression Set 230 | 1368042_a_at | - | - |
| Rat Expression Set 230 | 1368042_PM_a_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10867797 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10871284 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10903225 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10923208 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10709775 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10812015 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10906453 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10704916 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10729502 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10742833 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10861905 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10937358 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10788031 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10739593 | - | - |
| Rat Genome U34 Set | M64986_at | - | - |
| Rat Genome U34 Set | M64986_g_at | - | - |
| Rat Genome U34 Set | rc_AI045885_s_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 21557521 | - | - |
| ABI Rat Genome Survey Microarray | 21707264 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1359535 | - | - |
| RatRef-12 Expression BeadChip | ILMN_53698 | - | - |
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