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          • Home
          • › Search Tool
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          • › Rn06164871_s1
          See other SOX2 GE Assays ›
          Gene Symbol:
          Sox2
          Gene Name:
          SRY (sex determining region Y)-box 2
          Gene Aliases:
          RGD1565646
          Chromosome Location:
          Chr.2: 121062030 - 121203880 on Build Rnor_6.0
          Species:
          Rat
          Species Specific ID (Flybase ID):
          -
          Assay ID Rn06164871_s1
          Size
          Availability Made To Order
          Catalog # 4351372
          Price
          Your Price
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: Sox2
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq NM_001109181.1 NP_001102651.1 1 386 66

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          More Information


          Additional Information:

          This assay is in the 5'UTR region of the NM_001109181.1 transcripts.

          Set Membership:

          Amplicon length less than or equal to 70 Detect Genomic DNA Rattus norvegicus Both primers and probe map within a single exon

          Panther Classification:

          Molecular Function -

          HMG box transcription factor

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription from RNA polymerase II promoter
          osteoblast differentiation
          eye development
          cell fate specification
          endodermal cell fate specification
          positive regulation of neuroblast proliferation
          regulation of transcription, DNA-templated
          regulation of transcription from RNA polymerase II promoter
          transcription from RNA polymerase II promoter
          cell cycle arrest
          sensory perception of sound
          response to wounding
          response to organic substance
          regulation of gene expression
          stem cell population maintenance
          forebrain neuron differentiation
          pituitary gland development
          adenohypophysis development
          cerebral cortex development
          positive regulation of cell-cell adhesion
          negative regulation of Wnt signaling pathway
          male genitalia development
          positive regulation of epithelial cell differentiation
          forebrain development
          olfactory placode formation
          response to retinoic acid
          somatic stem cell population maintenance
          tissue regeneration
          inner ear morphogenesis
          regulation of cysteine-type endopeptidase activity involved in apoptotic process
          positive regulation of MAPK cascade
          tongue development
          cell fate commitment
          negative regulation of cell differentiation
          positive regulation of cell differentiation
          negative regulation of neuron differentiation
          positive regulation of neuron differentiation
          negative regulation of osteoblast differentiation
          positive regulation of Notch signaling pathway
          positive regulation of transcription, DNA-templated
          positive regulation of transcription from RNA polymerase II promoter
          pigment biosynthetic process
          lung alveolus development
          embryonic organ development
          anatomical structure formation involved in morphogenesis
          neuron fate commitment
          inner ear development
          diencephalon morphogenesis
          stem cell differentiation
          negative regulation of epithelial cell proliferation
          regulation of neurogenesis
          detection of mechanical stimulus involved in sensory perception of sound
          detection of mechanical stimulus involved in equilibrioception
          retina morphogenesis in camera-type eye
          lens induction in camera-type eye
          epithelial tube branching involved in lung morphogenesis
          response to growth factor
          negative regulation of canonical Wnt signaling pathway
          neuronal stem cell population maintenance
          transcription regulatory region sequence-specific DNA binding
          RNA polymerase II transcription factor activity, sequence-specific DNA binding
          transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
          molecular_function
          DNA binding
          chromatin binding
          transcription factor activity, sequence-specific DNA binding
          protein binding
          transcription factor binding
          miRNA binding
          sequence-specific DNA binding
          transcription regulatory region DNA binding
          protein heterodimerization activity

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          Host server : magellan-search-784b477dbd-pq4vn:80/100.66.130.62:80.
          git-commit: d41a97e986437cfbf980934f14197a4b4d3eb741
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