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          • Home
          • › Search Tool
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          • › Hs03922344_s1
          See other CDX2 GE Assays ›
          Gene Symbol:
          CDX2
          Gene Name:
          caudal type homeobox 2
          Gene Aliases:
          CDX-3, CDX2/AS, CDX3
          Chromosome Location:
          Chr.13: 27960918 - 27969368 on Build GRCh38
          Species:
          Human
          Species Specific ID (Flybase ID):
          -
          Assay ID Hs03922344_s1
          Size
          Availability Made To Order
          Catalog # 4426961
          Price
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          • Genomic Map
          • Assay Details
          • More Information

          Genomic Map

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          Assay Details

          Gene Symbol: CDX2
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
          RefSeq XM_011534875.2 XP_011533177.1 3 3166 98
          XM_011534878.2 XP_011533180.1 3 3328 98
          XM_011534879.2 XP_011533181.1 3 3293 98
          GenBank mRNA AK000205.1 - 1 451 98
          Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
          GenBankmRNA AI345995.1 - 2 Chr. 13 - 27960920 - 27961560 [+] on Build GRCh38 98
          GenBankmRNA AI340343.1 - 2 Chr. 13 - 27960920 - 27961547 [+] on Build GRCh38 98
          GenBankmRNA AI733838.1 - 2 Chr. 13 - 27960920 - 27961537 [+] on Build GRCh38 98
          GenBankmRNA AI346700.1 - 2 Chr. 13 - 27960920 - 27961512 [+] on Build GRCh38 98
          GenBankmRNA AI276788.1 - 2 Chr. 13 - 27960920 - 27961520 [+] on Build GRCh38 98
          GenBankmRNA AI309932.1 - 2 Chr. 13 - 27960920 - 27961474 [+] on Build GRCh38 98
          GenBankmRNA AI340336.1 - 2 Chr. 13 - 27960920 - 27961509 [+] on Build GRCh38 98
          GenBankmRNA AI285323.1 - 2 Chr. 13 - 27960920 - 27961452 [+] on Build GRCh38 98
          GenBankmRNA AI304835.1 - 2 Chr. 13 - 27960920 - 27961492 [+] on Build GRCh38 98
          GenBankmRNA AI261232.1 - 2 Chr. 13 - 27960920 - 27961508 [+] on Build GRCh38 98
          GenBankmRNA AI346553.1 - 2 Chr. 13 - 27960920 - 27961499 [+] on Build GRCh38 98
          GenBankmRNA AI367898.1 - 2 Chr. 13 - 27960920 - 27961474 [+] on Build GRCh38 98
          GenBankmRNA AI733228.1 - 2 Chr. 13 - 27960923 - 27961526 [+] on Build GRCh38 98

          Adjacent Gene Details

          Gene name Gene Symbol Alias Distance Relative Direction Location Chromsome
          Upstream ATP synthase,
          H+ transporting,
          mitochondrial F1 complex,
          epsilon subunit pseudogene 2
          ATP5EP2 -15.3kb Anti-sense Chr. 13 - 27945206 - 27945573 on NCBI Build GRCh38
          Downstream ureidoimidazoline (2-oxo-4-hydroxy-4-carboxy-5-) decarboxylase URAD PRHOXNB 16.4kb Sense Chr. 13 - 27978106 - 27988637 on NCBI Build GRCh38

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          More Information


          Additional Information:

          Based on assay re-evaluation, this assay may detect genomic DNA. Please contact Tech Support if you need more information.

          Set Membership:

          Amplicon length between 86 and 100 3' Most Detect Genomic DNA Homo sapiens Both primers and probe map within a single exon

          Gene Ontology Categories:

          Function(s) Process(es)

          negative regulation of transcription by RNA polymerase II
          blood vessel development
          trophectodermal cell differentiation
          transcription by RNA polymerase II
          positive regulation of cell population proliferation
          endosome to lysosome transport
          animal organ morphogenesis
          anterior/posterior axis specification
          regulation of somitogenesis
          cell differentiation
          somatic stem cell population maintenance
          establishment or maintenance of epithelial cell apical/basal polarity
          positive regulation of cell differentiation
          positive regulation of transcription, DNA-templated
          intestinal epithelial cell differentiation
          labyrinthine layer development
          RNA polymerase II cis-regulatory region sequence-specific DNA binding
          DNA-binding transcription repressor activity, RNA polymerase II-specific
          DNA-binding transcription factor activity
          transcription corepressor activity

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