Name: [Hs04274507_m1] [HTR5A-AS1]
Creator: Thermo Fisher Scientific
Keywords: [HTR5A-AS1] Assay, [HTR5A antisense RNA 1] Assay

Assay Details

Gene Symbol: HTR5A-AS1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_038945.1		1 - 2	523		76
GenBank mRNA	BC031272.1	-	1 - 2	497		76
GenBank mRNA	BC045795.1	-	1 - 2	500		76

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	DA276425.1	-	1 - 2	235	Chr. 7 - 155068906 - 155071269 [-] on Build GRCh38	76
GenBankmRNA	DA168347.1	-	1 - 2	152	Chr. 7 - 155068843 - 155071166 [-] on Build GRCh38	76
GenBankmRNA	BM926157.1	-		201	Chr. - - [-] on Build	76
GenBankmRNA	BI603546.1	-	1 - 2	503	Chr. 7 - 155068947 - 155071530 [-] on Build GRCh38	76
GenBankmRNA	DB176520.1	-	1 - 2	217	Chr. 7 - 155068915 - 155071249 [-] on Build GRCh38	76
GenBankmRNA	DB486743.1	-	1 - 2	287	Chr. 7 - 155069104 - 155071320 [-] on Build GRCh38	76
GenBankmRNA	DA176219.1	-	1 - 2	217	Chr. 7 - 155068895 - 155071248 [-] on Build GRCh38	76

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	PAXIP1 antisense RNA 1 (head to head)	PAXIP1-AS1		-61.4kb	Anti-sense	Chr. 7 - 155003433 - 155005703 on NCBI Build GRCh38
Downstream	insulin induced gene 1	INSIG1	CL-6, CL6	226.2kb	Anti-sense	Chr. 7 - 155297776 - 155310235 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0700013163.hg.1
This assay targets the same location as HTA transcript cluster(s) TC07002055.hg.1

Set Membership:

Amplicon length between 71 and 85

3' Most

Mammalian Gene Collection

Homo sapiens

Probe spans exons

MicroArray Probes:

Agilent Affymetrix ArrayStar Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent Human Whole Genome ChIP Tiling Array	A_17_P05885710	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P05885709	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P05885712	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P05885711	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P05885707	-	-
Agilent Human Whole Genome ChIP Tiling Array	A_17_P05885708	-	-
Agilent Whole Human Genome Microarray 4x44K v2	A_33_P3375279	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	53704	-	-
Agilent Whole Human Genome Microarray 4x44K v2	A_33_P3375279	-	-
Agilent Human Genome 244K CGH Microarray (Alpha Test)	A_16_P01840576	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_16_P01840576	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_16_P18175491	-	-
Agilent Human 1B Microarray G4111A	A_32_P207270	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR07031533.hg.1	ENST00000395731.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR07031533.hg.1	ENST00000493904.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR07031533.hg.1	ENST00000543018.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR07031533.hg.1	NR_038945.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR07031533.hg.1	TC07002055.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC0700013163.hg.1	ENST00000395731.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0700013163.hg.1	ENST00000395731.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0700013163.hg.1	ENST00000395731.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0700013163.hg.1	ENST00000395731.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0700013163.hg.1	ENST00000493904.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0700013163.hg.1	ENST00000493904.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0700013163.hg.1	NR_038945.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0700013163.hg.1	NR_038945.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0700013163.hg.1	NR_038945.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC0700013163.hg.1	NR_038945.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR07031530.hg.1	ENST00000395731.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR07031530.hg.1	ENST00000543018.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR07031530.hg.1	NR_038945.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR07031530.hg.1	TC07002055.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR07031529.hg.1	ENST00000395731.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR07031529.hg.1	NR_038945.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR07031529.hg.1	TC07002055.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR0700194979.hg.1	ENST00000395731.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0700194979.hg.1	NR_038945.1	Refseq
Affymetrix Human Clariom D Assay	PSR0700194979.hg.1	TC0700013163.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0700194979.hg.1	NR_038945.1	Refseq
Affymetrix Human Clariom D Assay	PSR0700194979.hg.1	ENST00000395731.5	Ensembl
Affymetrix Human Clariom D Assay	TC0700013163.hg.1	ENST00000395731.5	Ensembl
Affymetrix Human Clariom D Assay	TC0700013163.hg.1	ENST00000395731.5	Ensembl
Affymetrix Human Clariom D Assay	TC0700013163.hg.1	ENST00000395731.5	Ensembl
Affymetrix Human Clariom D Assay	TC0700013163.hg.1	ENST00000395731.5	Ensembl
Affymetrix Human Clariom D Assay	TC0700013163.hg.1	ENST00000493904.2	Ensembl
Affymetrix Human Clariom D Assay	TC0700013163.hg.1	ENST00000493904.2	Ensembl
Affymetrix Human Clariom D Assay	TC0700013163.hg.1	NR_038945.1	Refseq
Affymetrix Human Clariom D Assay	TC0700013163.hg.1	NR_038945.1	Refseq
Affymetrix Human Clariom D Assay	TC0700013163.hg.1	NR_038945.1	Refseq
Affymetrix Human Clariom D Assay	TC0700013163.hg.1	NR_038945.1	Refseq
Affymetrix Human Clariom D Assay	PSR0700194978.hg.1	ENST00000395731.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0700194978.hg.1	NR_038945.1	Refseq
Affymetrix Human Clariom D Assay	PSR0700194978.hg.1	TC0700013163.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0700194978.hg.1	ENST00000395731.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0700194978.hg.1	NR_038945.1	Refseq
Affymetrix Human Clariom D Assay	PSR0700194983.hg.1	ENST00000395731.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0700194983.hg.1	ENST00000493904.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0700194983.hg.1	NR_038945.1	Refseq
Affymetrix Human Clariom D Assay	PSR0700194983.hg.1	TC0700013163.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0700194983.hg.1	ENST00000395731.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0700194983.hg.1	ENST00000493904.2	Ensembl
Affymetrix Human Clariom D Assay	PSR0700194983.hg.1	NR_038945.1	Refseq
Affymetrix Human Clariom D Assay	PSR0700194980.hg.1	ENST00000395731.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0700194980.hg.1	NR_038945.1	Refseq
Affymetrix Human Clariom D Assay	PSR0700194980.hg.1	TC0700013163.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR0700194980.hg.1	ENST00000395731.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0700194980.hg.1	NR_038945.1	Refseq

Availability	Made To Order
Catalog #	4426961
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Array Name	Probe IDs	Targets	Target Type
HumanHT-12 v4 Expression BeadChip	ILMN_3182017	BC031272.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_3182017	BC045795.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_3182017	DC407680.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_3182017	NR_038945.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_3182017	AK303289.1	human_transcriptome

System Message

Genomic Map