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- Gene Symbol:
-
Smad3 - Gene Name:
- SMAD family member 3
- Gene Aliases:
- Madh3, Smad 3, mad3
- Chromosome Location:
- Chr.8: 68569530 - 68678349 on Build Rnor_6.0
- Species:
- Rat
- Species Specific ID (Flybase ID):
- -
Genomic Map
Back To TopAssay Details
| Gene Symbol: Smad3 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_013095.3 | NP_037227.1 | 4 - 5 | 806 | 94 | |
| XM_008766216.1 | XP_008764438.1 | 2 - 3 | 745 | 94 | ||
| XM_008766217.1 | XP_008764439.1 | 2 - 3 | 471 | 94 | ||
| GenBank mRNA | BC064437.1 | - | 806 | 94 | ||
| DQ409172.1 | - | 1 - 2 | 62 | 94 | ||
| U66479.1 | - | 4 - 5 | 615 | 94 | ||
Back To TopMore Information
Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC0800002735.rn.1Additional Information:
This assay is in the 5'UTR region of the XM_008766216.1, XM_008766217.1 transcripts.
Set Membership: |
Ambion siRNA available
Amplicon length between 86 and 100
Mammalian Gene Collection
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Gene Ontology Categories:
Function(s)
Process(es)
negative regulation of transcription by RNA polymerase II
skeletal system development
osteoblast differentiation
ureteric bud development
response to hypoxia
in utero embryonic development
mesoderm formation
somitogenesis
liver development
negative regulation of protein phosphorylation
heart looping
osteoblast development
immune system development
transcription, DNA-templated
regulation of transcription by RNA polymerase II
transport
activation of cysteine-type endopeptidase activity involved in apoptotic process
immune response
transforming growth factor beta receptor signaling pathway
SMAD protein complex assembly
gastrulation
endoderm development
negative regulation of cell population proliferation
embryonic pattern specification
positive regulation of gene expression
positive regulation of alkaline phosphatase activity
positive regulation of epithelial to mesenchymal transition
regulation of striated muscle tissue development
regulation of transforming growth factor beta receptor signaling pathway
mitigation of host defenses by virus
signal transduction involved in regulation of gene expression
negative regulation of cell growth
positive regulation of cell migration
positive regulation of bone mineralization
thyroid gland development
positive regulation of chondrocyte differentiation
positive regulation of interleukin-1 beta production
regulation of transforming growth factor beta2 production
positive regulation of transforming growth factor beta3 production
activin receptor signaling pathway
negative regulation of osteoblast proliferation
intracellular signal transduction
nodal signaling pathway
T cell activation
negative regulation of protein catabolic process
negative regulation of apoptotic process
cell-cell junction organization
negative regulation of osteoblast differentiation
positive regulation of transcription, DNA-templated
negative regulation of mitotic cell cycle
positive regulation of transcription by RNA polymerase II
paraxial mesoderm morphogenesis
developmental growth
embryonic foregut morphogenesis
embryonic cranial skeleton morphogenesis
regulation of epithelial cell proliferation
negative regulation of inflammatory response
regulation of immune response
protein stabilization
positive regulation of positive chemotaxis
regulation of binding
positive regulation of stress fiber assembly
positive regulation of focal adhesion assembly
pericardium development
transdifferentiation
SMAD protein signal transduction
negative regulation of wound healing
lens fiber cell differentiation
positive regulation of canonical Wnt signaling pathway
extrinsic apoptotic signaling pathway
activation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway
positive regulation of extracellular matrix assembly
transcription cis-regulatory region binding
RNA polymerase II cis-regulatory region sequence-specific DNA binding
cis-regulatory region sequence-specific DNA binding
DNA binding
chromatin binding
double-stranded DNA binding
DNA-binding transcription factor activity
transforming growth factor beta receptor binding
protein binding
collagen binding
beta-catenin binding
transcription factor binding
zinc ion binding
enzyme binding
protein kinase binding
phosphatase binding
chromatin DNA binding
ubiquitin protein ligase binding
identical protein binding
protein homodimerization activity
ubiquitin binding
bHLH transcription factor binding
sequence-specific DNA binding
SMAD binding
protein heterodimerization activity
co-SMAD binding
R-SMAD binding
negative regulation of transcription by RNA polymerase II
skeletal system development
osteoblast differentiation
ureteric bud development
response to hypoxia
in utero embryonic development
mesoderm formation
somitogenesis
liver development
negative regulation of protein phosphorylation
heart looping
osteoblast development
immune system development
transcription, DNA-templated
regulation of transcription by RNA polymerase II
transport
activation of cysteine-type endopeptidase activity involved in apoptotic process
immune response
transforming growth factor beta receptor signaling pathway
SMAD protein complex assembly
gastrulation
endoderm development
negative regulation of cell population proliferation
embryonic pattern specification
positive regulation of gene expression
positive regulation of alkaline phosphatase activity
positive regulation of epithelial to mesenchymal transition
regulation of striated muscle tissue development
regulation of transforming growth factor beta receptor signaling pathway
mitigation of host defenses by virus
signal transduction involved in regulation of gene expression
negative regulation of cell growth
positive regulation of cell migration
positive regulation of bone mineralization
thyroid gland development
positive regulation of chondrocyte differentiation
positive regulation of interleukin-1 beta production
regulation of transforming growth factor beta2 production
positive regulation of transforming growth factor beta3 production
activin receptor signaling pathway
negative regulation of osteoblast proliferation
intracellular signal transduction
nodal signaling pathway
T cell activation
negative regulation of protein catabolic process
negative regulation of apoptotic process
cell-cell junction organization
negative regulation of osteoblast differentiation
positive regulation of transcription, DNA-templated
negative regulation of mitotic cell cycle
positive regulation of transcription by RNA polymerase II
paraxial mesoderm morphogenesis
developmental growth
embryonic foregut morphogenesis
embryonic cranial skeleton morphogenesis
regulation of epithelial cell proliferation
negative regulation of inflammatory response
regulation of immune response
protein stabilization
positive regulation of positive chemotaxis
regulation of binding
positive regulation of stress fiber assembly
positive regulation of focal adhesion assembly
pericardium development
transdifferentiation
SMAD protein signal transduction
negative regulation of wound healing
lens fiber cell differentiation
positive regulation of canonical Wnt signaling pathway
extrinsic apoptotic signaling pathway
activation of cysteine-type endopeptidase activity involved in apoptotic signaling pathway
positive regulation of extracellular matrix assembly
transcription cis-regulatory region binding
RNA polymerase II cis-regulatory region sequence-specific DNA binding
cis-regulatory region sequence-specific DNA binding
DNA binding
chromatin binding
double-stranded DNA binding
DNA-binding transcription factor activity
transforming growth factor beta receptor binding
protein binding
collagen binding
beta-catenin binding
transcription factor binding
zinc ion binding
enzyme binding
protein kinase binding
phosphatase binding
chromatin DNA binding
ubiquitin protein ligase binding
identical protein binding
protein homodimerization activity
ubiquitin binding
bHLH transcription factor binding
sequence-specific DNA binding
SMAD binding
protein heterodimerization activity
co-SMAD binding
R-SMAD binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P068167 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 448894 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 496631 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 897719 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 628793 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 520310 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 573892 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 668171 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 476815 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 651607 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 955138 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 284436 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 295037 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 586682 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 659175 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 278273 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 403391 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 508696 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 1778 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 393041 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 809474 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 449438 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 793519 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 178252 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 344128 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 720031 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 510829 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 311200 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 772429 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 867386 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 358342 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 856610 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 510101 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 923113 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 278679 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 315305 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 755126 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 124760 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 506715 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 639847 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 206310 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 330458 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 468793 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 586686 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 521337 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 587697 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 67612 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 377969 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 388837 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 320558 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 782353 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 104626 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 5206 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 893699 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 291992 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 806619 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 820844 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 920856 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 355347 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 819229 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 537165 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 485404 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 437635 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 601331 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 928709 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 145602 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 717363 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 257350 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 660076 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 474519 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 539683 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 721550 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 794707 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 319489 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 5420 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 716086 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 414419 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 580042 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 101098 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 6643 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 41443 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 120321 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 96270 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 137341 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 111640 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 101468 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 115815 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 63675 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 130310 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 153782 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 12075 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 93016 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 34141 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 127986 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P068167 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P068167 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P068167 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P531593 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 59122 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 21872 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 61087 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 88223 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 98233 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 2458 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 74115 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10918185 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918184 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918179 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918183 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918180 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918182 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918172 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918170 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918171 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918175 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918174 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918178 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918177 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918181 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918173 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918176 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10918169 | - | - |
| Rat Genome 230 2.0 Array | 1369528_at | - | - |
| Rat Genome 230 2.0 Array | 1369528_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1389127_at | - | - |
| Rat Genome 230 2.0 Array | 1389127_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1369528_at | - | - |
| Affymetrix HT Rat Focus Array | 1369528_PM_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR0800022256.rn.1 | TC0800002735.rn.1 | RTA TC |
| Rat Expression Set 230 | 1369528_at | - | - |
| Rat Expression Set 230 | 1369528_PM_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10918169 | - | - |
| Rat Genome U34 Set | U66479_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 21110267 | - | - |
| ABI Rat Genome Survey Microarray | 22199973 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1354074 | - | - |
| RatRef-12 Expression BeadChip | ILMN_59033 | - | - |
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